CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HCOI00760100
(
Haemonchus contortus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
HCOI00760100
T153817_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
blmp-1
M08103_2.00
Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR
ChIP-seq
Mathelier et al.(2014)
MA0537.1
0.797
0.904
blmp-1
M08195_2.00
Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB
ChIP-seq
Contrino et al.(2012)
Mw137
0.797
0.904
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HCOI00760100.t1
C2H2 ZF
487
509
YACKECHKTFGQLSNLKVHVRTH
HCOI00760100.t1
C2H2 ZF
515
537
FKCTVCGKEFTQLAHLQKHNLVH
HCOI00760100.t1
C2H2 ZF
543
565
HRCDICDKRFSSTSNLKTHLRLH
HCOI00760100.t1
C2H2 ZF
571
593
YACDVCSAKFTQYVHLRLHKRLH
HCOI00760100.t1
C2H2 ZF
599
620
YACMSCGKKYISPSGLRTHWKT
HCOI00760100.t2
C2H2 ZF
486
508
YACKECHKTFGQLSNLKVHVRTH
HCOI00760100.t2
C2H2 ZF
514
536
FKCTVCGKEFTQLAHLQKHNLVH
HCOI00760100.t2
C2H2 ZF
542
564
HRCDICDKRFSSTSNLKTHLRLH
HCOI00760100.t2
C2H2 ZF
570
592
YACDVCSAKFTQYVHLRLHKRLH
HCOI00760100.t2
C2H2 ZF
598
619
YACMSCGKKYISPSGLRTHWKT
Links
Other
C2H2 ZF
family TFs
Other
Haemonchus contortus
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy