CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HmN_000840400
(
Hymenolepis microstoma
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
HmN_000840400
T154059_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ci
M03672_2.00
Drosophila melanogaster
NCGMCCACMN
NKGTGGKCGN
SELEX
Nitta et al.(2015)
ci_1
0.784
0.835
ci
M06084_2.00
Drosophila melanogaster
RGMCCACMCAC
GTGKGTGGKCY
B1H
Zhu et al.(2011)
Ci_SANGER_5_FBgn0004859
0.784
0.835
ci
M02644_2.00
Drosophila melanogaster
GACCACCCAMG
CKTGGGTGGTC
SELEX
Hallikas et al.(2006)
Ci
0.784
0.835
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HmN_000840400
C2H2 ZF
714
739
TTCRWSNCQCQFESQDELVKHISNEH
HmN_000840400
C2H2 ZF
747
774
FVCYWRDCVRGARPFKAQYMLVVHMRRH
HmN_000840400
C2H2 ZF
780
804
HKCIFDGCSKRYSRLENLKTHLRSH
HmN_000840400
C2H2 ZF
810
835
YQCEVPGCNKAFSNASDRAKHQNRTH
HmN_000840400
C2H2 ZF
841
866
YVCKVMGCSKRYTDPSSLRKHVKTVH
Links
Other
C2H2 ZF
family TFs
Other
Hymenolepis microstoma
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TsM_000018800
Taenia solium
TsM_000018800
I
0.823
EmuJ_000711000
Echinococcus multilocularis
EmuJ_000711000
I
0.820
B_00892
Schistosoma haematobium
B_00892
I
0.806
Sjc_0091950
Schistosoma japonicum
Sjc_0091950
I
0.796
ACUA017715
Anopheles culicifacies
ACUA017715
I
0.794
ADIR005874
Anopheles dirus
ADIR005874
I
0.794
ACHR002736
Anopheles christyi
ACHR002736
I
0.794
AALB008266
Anopheles albimanus
AALB008266
I
0.794
LCUP015520
Lucilia cuprina
LCUP015520
I
0.794
AFAF006125
Anopheles farauti
AFAF006125
I
0.794
AATE009625
Anopheles atroparvus
AATE009625
I
0.794
AMIN000086
Anopheles minimus
AMIN000086
I
0.794
ADAC002075
Anopheles darlingi
ADAC002075
I
0.794
AAEL012039
Aedes aegypti
AAEL012039
I
0.794
AGAP004637
Anopheles gambiae
AGAP004637
I
0.794
ASTEI06951
Anopheles stephensi
ASTEI06951
I
0.794
AMAM007692
Anopheles maculatus
AMAM007692
I
0.794
ASIS001386
Anopheles sinensis
ASIS001386
I
0.794
AFUN004511
Anopheles funestus
AFUN004511
I
0.794
TC003000
Tribolium castaneum
TC003000
I
0.792
CpipJ_CPIJ000614
Culex pipiens
CpipJ_CPIJ000614
I
0.792
GL18388
Drosophila persimilis
FBgn0155989
I
0.792
GA27838
Drosophila pseudoobscura
FBgn0249202
I
0.792
CPIJ000614
Culex quinquefasciatus
CPIJ000614
I
0.792
GH23992
Drosophila grimshawi
FBgn0131449
I
0.787
ci
Drosophila simulans
FBgn0012866
I
0.784
ci
Drosophila yakuba
FBgn0022826
I
0.784
GG16466
Drosophila erecta
FBgn0108697
I
0.784
GM23237
Drosophila sechellia
FBgn0178104
I
0.784
GK13666
Drosophila willistoni
FBgn0215674
I
0.784
GJ14655
Drosophila virilis
FBgn0201862
I
0.784
ci
Drosophila melanogaster
FBgn0004859
D
0.784
GI14119
Drosophila mojavensis
FBgn0136873
I
0.777
LotgiG119241
Lottia gigantea
LotgiG119241
I
0.775
T265_14352
Opisthorchis viverrini
T265_14352
N
0.764
csin105947
Clonorchis sinensis
csin105947
N
0.764