CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HmN_000840400
(
Hymenolepis microstoma
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
HmN_000840400
T154059_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ci
M03672_2.00
Drosophila melanogaster
NCGMCCACMN
NKGTGGKCGN
SELEX
Nitta et al.(2015)
ci_1
0.784
0.835
ci
M06084_2.00
Drosophila melanogaster
RGMCCACMCAC
GTGKGTGGKCY
B1H
Zhu et al.(2011)
Ci_SANGER_5_FBgn0004859
0.784
0.835
ci
M02644_2.00
Drosophila melanogaster
GACCACCCAMG
CKTGGGTGGTC
SELEX
Hallikas et al.(2006)
Ci
0.784
0.835
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HmN_000840400
C2H2 ZF
714
739
TTCRWSNCQCQFESQDELVKHISNEH
HmN_000840400
C2H2 ZF
747
774
FVCYWRDCVRGARPFKAQYMLVVHMRRH
HmN_000840400
C2H2 ZF
780
804
HKCIFDGCSKRYSRLENLKTHLRSH
HmN_000840400
C2H2 ZF
810
835
YQCEVPGCNKAFSNASDRAKHQNRTH
HmN_000840400
C2H2 ZF
841
866
YVCKVMGCSKRYTDPSSLRKHVKTVH
Links
Other
C2H2 ZF
family TFs
Other
Hymenolepis microstoma
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy