CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L596_g11489
(
Steinernema carpocapsae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
L596_g11489
T154307_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
klu-2
M00645_2.00
Caenorhabditis elegans
NNCCCMCKYN
NRMGKGGGNN
PBM
Narasimhan et al.(2015)
pTH9354
0.764
0.797
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L596_g11489.t1
C2H2 ZF
356
378
YICRYCKKDFKRPDILSRHLRRH
L596_g11489.t1
C2H2 ZF
384
406
FHCEDCGRYFSRSDHLRTHQRTH
L596_g11489.t1
C2H2 ZF
412
435
YKCTHCPYAARRRDVLTRHMSTKH
L596_g11489.t2
C2H2 ZF
427
449
YICRYCKKDFKRPDILSRHLRRH
L596_g11489.t2
C2H2 ZF
455
477
FHCEDCGRYFSRSDHLRTHQRTH
L596_g11489.t2
C2H2 ZF
483
506
YKCTHCPYAARRRDVLTRHMSTKH
Links
Other
C2H2 ZF
family TFs
Other
Steinernema carpocapsae
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
L893_g30492
Steinernema glaseri
L893_g30492
I
0.820
L889_g28325
Steinernema feltiae
L889_g28325
I
0.808
L898_g6014
Steinernema monticolum
L898_g6014
I
0.801
BXY_0680200
Bursaphelenchus xylophilus
BXY_0680200
I
0.776
SVE_1868800
Strongyloides venezuelensis
SVE_1868800
N
0.771
PTRK_0000085000
Parastrongyloides trichosuri
PTRK_0000085000
N
0.771
SSTP_0000460600
Strongyloides stercoralis
SSTP_0000460600
N
0.771
GPLIN_001154300
Globodera pallida
GPLIN_001154300
N
0.766
GPLIN_000062600
Globodera pallida
GPLIN_000062600
N
0.766
CBN19187
Caenorhabditis brenneri
CBN19187
I
0.764
CBN10213
Caenorhabditis brenneri
CBN10213
I
0.764
TCNE_0000622401
Toxocara canis
TCNE_0000622401
I
0.764
CRE07023
Caenorhabditis remanei
CRE07023
I
0.764
CBG12610
Caenorhabditis briggsae
CBG12610
I
0.764
klu-2
Caenorhabditis elegans
WBGene00022592
D
0.764
CJA33261
Caenorhabditis japonica
CJA33261
I
0.761
RSKR_0000033200
Rhabditophanes kr3021
RSKR_0000033200
N
0.761
TELCIR_01018
Teladorsagia circumcincta
TELCIR_01018
I
0.760
HCOI01254700
Haemonchus contortus
HCOI01254700
I
0.760
ANCCAN_17930
Ancylostoma caninum
ANCCAN_17930
I
0.760
ANCCEY_13832
Ancylostoma ceylanicum
ANCCEY_13832
I
0.760
HPLM_0001133101
Haemonchus placei
HPLM_0001133101
I
0.760