CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L596_g12501
(
Steinernema carpocapsae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
L596_g12501
T154310_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
B0310.2
M00638_2.00
Caenorhabditis elegans
NNDNCCTCVN
NBGAGGNHNN
PBM
Narasimhan et al.(2015)
pTH10823
0.768
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L596_g12501.t1
C2H2 ZF
324
348
FTCSHTNCQKRFANKFLLKKHQFIH
L596_g12501.t1
C2H2 ZF
354
376
HICPFCSKRFNRKDNLLRHKKTH
L596_g12501.t2
C2H2 ZF
115
139
FTCSHTNCQKRFANKFLLKKHQFIH
L596_g12501.t2
C2H2 ZF
145
167
HICPFCSKRFNRKDNLLRHKKTH
L596_g12501.t3
C2H2 ZF
274
298
FTCSHTNCQKRFANKFLLKKHQFIH
L596_g12501.t3
C2H2 ZF
304
326
HICPFCSKRFNRKDNLLRHKKTH
Links
Other
C2H2 ZF
family TFs
Other
Steinernema carpocapsae
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy