L596_g21750 (Steinernema carpocapsae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 L596_g21750 T154359_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
blmp-1
M08103_2.00
Caenorhabditis elegans
YTYTCHYTTTY

RAAARDGARAR
ChIP-seq
Mathelier et al.(2014)
MA0537.1
0.770 0.825
blmp-1
M08195_2.00
Caenorhabditis elegans
VACTTTCDCY

RGHGAAAGTB
ChIP-seq
Contrino et al.(2012)
Mw137
0.770 0.825
Blimp-1
M03692_2.00
Drosophila melanogaster
NNYACTTTCVYYN

NRRBGAAAGTRNN
SELEX
Nitta et al.(2015)
Blimp-1_1
0.759 0.816
Blimp-1
M06141_2.00
Drosophila melanogaster
ACTTTCACTTTY

RAAAGTGAAAGT
B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625
0.759 0.816
Blimp-1
M06142_2.00
Drosophila melanogaster
RCTTTCMCTTTY

RAAAGKGAAAGY
B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625
0.759 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L596_g21750.t1 C2H2 ZF 709 731
L596_g21750.t1 C2H2 ZF 737 759
L596_g21750.t1 C2H2 ZF 765 787
L596_g21750.t1 C2H2 ZF 793 815
L596_g21750.t1 C2H2 ZF 821 842

Links

Other C2H2 ZF family TFs
Other Steinernema carpocapsae TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AB07899.1 Alternaria brassicicola AB07899.1 N 0.000
COCC4DRAFT_22906 Bipolaris maydis COCC4DRAFT_22906 N 0.000
COCMIDRAFT_29351 Bipolaris oryzae COCMIDRAFT_29351 N 0.000
COCSADRAFT_227610 Bipolaris sorokiniana COCSADRAFT_227610 N 0.000
COCVIDRAFT_11929 Bipolaris victoriae COCVIDRAFT_11929 N 0.000
COCCADRAFT_23425 Bipolaris zeicola COCCADRAFT_23425 N 0.000
e_gw1.14.312.1 Cochliobolus heterostrophus C5 e_gw1.14.312.1 N 0.000
LEMA_P064420.1 Leptosphaeria maculans LEMA_P064420.1 N 0.000
UCRNP2_4028 Neofusicoccum parvum UCRNP2_4028 N 0.000
SNOG_03360 Phaeosphaeria nodorum SNOG_03360 N 0.000
SETTUDRAFT_166284 Setosphaeria turcica SETTUDRAFT_166284 N 0.000
SNOG_03360 Stagonospora nodorum SNOG_03360 N 0.000
PV09_06839 Verruconis gallopava PV09_06839 N 0.000