CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L596_g22597
(
Steinernema carpocapsae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
L596_g22597
T154363_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CG42741
M06169_2.00
Drosophila melanogaster
RCCACRCCCWHY
RDWGGGYGTGGY
B1H
Zhu et al.(2011)
CG9895_SANGER_10_FBgn0034810
0.762
0.806
CG42741
M06170_2.00
Drosophila melanogaster
VRCCACRCCCH
DGGGYGTGGYB
B1H
Zhu et al.(2011)
CG9895_SOLEXA_5_FBgn0034810
0.762
0.806
KLF2
M04455_2.00
Homo sapiens
NVCCMCRCCCH
DGGGYGKGGBN
SELEX
Yin et al.(2017)
KLF2_eDBD_HT-SELEX
0.758
0.806
KLF2
M10210_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LKLF_Q3
0.758
0.806
KLF2
M10211_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LKLF_Q6
0.758
0.806
KLF2
M04456_2.00
Homo sapiens
NVCCMCRCCCN
NGGGYGKGGBN
SELEX
Yin et al.(2017)
KLF2_eDBD_Methyl-HT-SELEX
0.758
0.806
KLF4
M04463_2.00
Homo sapiens
NVCCACRCCCH
DGGGYGTGGBN
SELEX
Yin et al.(2017)
KLF4_eDBD_HT-SELEX
0.758
0.806
KLF4
M08091_2.00
Homo sapiens
MCACACCCWNN
NNWGGGTGTGK
ChIP-seq
Mathelier et al.(2014)
MA0039.3
0.758
0.806
Klf4
M08021_2.00
Mus musculus
VRCCMCRCCCH
DGGGYGKGGYB
ChIP-seq
Chen et al.(2011)
SRP000217_Klf4
0.758
0.806
KLF4
M08894_2.00
Homo sapiens
RCCMCRCCCH
DGGGYGKGGY
Misc
Kulakovskiy et al.(2013)
KLF4_HUMAN.H11MO.0.A
0.758
0.806
Klf4
M08964_2.00
Mus musculus
GCCMCRCCCWBYBBN
NVVRVWGGGYGKGGC
Misc
Kulakovskiy et al.(2013)
KLF4_MOUSE.H11MO.0.A
0.758
0.806
KLF4
M10217_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GKLF_02
0.758
0.806
KLF4
M10218_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GKLF_Q3_01
0.758
0.806
KLF4
M10219_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GKLF_Q3
0.758
0.806
KLF4
M10220_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GKLF_Q4
0.758
0.806
KLF4
M04464_2.00
Homo sapiens
NVCCMCRCCCN
NGGGYGKGGBN
SELEX
Yin et al.(2017)
KLF4_eDBD_Methyl-HT-SELEX
0.758
0.806
KLF6
M04400_2.00
Homo sapiens
NVMCACRCCCH
DGGGYGTGKBN
SELEX
Yin et al.(2017)
KLF6_eDBD_HT-SELEX
0.758
0.774
KLF6
M08857_2.00
Homo sapiens
BYBYVNBCYMCDCCCYBBN
NVVRGGGHGKRGVNBRVRV
Misc
Kulakovskiy et al.(2013)
KLF6_HUMAN.H11MO.0.A
0.758
0.774
Klf6
M08962_2.00
Mus musculus
BYBYVNBCYMCDCCCYBBN
NVVRGGGHGKRGVNBRVRV
Misc
Kulakovskiy et al.(2013)
KLF6_MOUSE.H11MO.0.B
0.758
0.774
KLF6
M10113_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CPBP_Q6
0.758
0.774
KLF6
M04401_2.00
Homo sapiens
NRCCACGCCCH
DGGGCGTGGYN
SELEX
Yin et al.(2017)
KLF6_eDBD_Methyl-HT-SELEX
0.758
0.774
KLF4
M08243_2.00
Homo sapiens
RCCMCRCCCH
DGGGYGKGGY
ChIP-seq
Najafabadi et al.(2015b)
KLF14
0.758
0.725
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L596_g22597.t1
C2H2 ZF
2
17
KRYSKSSHLKAHARTH
L596_g22597.t1
C2H2 ZF
23
47
FRCDWNGCGWRFARSDELTRHYRKH
L596_g22597.t1
C2H2 ZF
53
75
FQCSLCERAFSRSDHLSLHIRRH
Links
Other
C2H2 ZF
family TFs
Other
Steinernema carpocapsae
TFs
261 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy