L892_g2443 (Steinernema scapterisci)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 L892_g2443 T154574_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
blmp-1
M08103_2.00
Caenorhabditis elegans
YTYTCHYTTTY

RAAARDGARAR
ChIP-seq
Mathelier et al.(2014)
MA0537.1
0.770 0.825
blmp-1
M08195_2.00
Caenorhabditis elegans
VACTTTCDCY

RGHGAAAGTB
ChIP-seq
Contrino et al.(2012)
Mw137
0.770 0.825
Blimp-1
M03692_2.00
Drosophila melanogaster
NNYACTTTCVYYN

NRRBGAAAGTRNN
SELEX
Nitta et al.(2015)
Blimp-1_1
0.759 0.816
Blimp-1
M06141_2.00
Drosophila melanogaster
ACTTTCACTTTY

RAAAGTGAAAGT
B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625
0.759 0.816
Blimp-1
M06142_2.00
Drosophila melanogaster
RCTTTCMCTTTY

RAAAGKGAAAGY
B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625
0.759 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L892_g2443.t1 C2H2 ZF 779 801
L892_g2443.t1 C2H2 ZF 807 829
L892_g2443.t1 C2H2 ZF 835 857
L892_g2443.t1 C2H2 ZF 863 885
L892_g2443.t1 C2H2 ZF 891 912

Links

Other C2H2 ZF family TFs
Other Steinernema scapterisci TFs

Invalid Input OrderBy

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action