CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L898_g13372
(
Steinernema monticolum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
L898_g13372
T154731_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
bcl-11
M00641_2.00
Caenorhabditis elegans
NNTGACCRNN
NNYGGTCANN
PBM
Narasimhan et al.(2015)
pTH10807
0.824
0.928
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L898_g13372.t1
C2H2 ZF
600
622
DRCQFCHKVFTNRSNLIVHLRSH
L898_g13372.t1
C2H2 ZF
628
650
YKCQLCPYACAQSSKLTRHMRTH
L898_g13372.t1
C2H2 ZF
658
683
FHCYICRMPFSVHSTLEKHMRKCVVH
L898_g13372.t2
C2H2 ZF
596
618
DRCQFCHKVFTNRSNLIVHLRSH
L898_g13372.t2
C2H2 ZF
624
646
YKCQLCPYACAQSSKLTRHMRTH
L898_g13372.t2
C2H2 ZF
654
679
FHCYICRMPFSVHSTLEKHMRKCVVH
L898_g13372.t3
C2H2 ZF
579
601
DRCQFCHKVFTNRSNLIVHLRSH
L898_g13372.t3
C2H2 ZF
607
629
YKCQLCPYACAQSSKLTRHMRTH
L898_g13372.t3
C2H2 ZF
637
662
FHCYICRMPFSVHSTLEKHMRKCVVH
Links
Other
C2H2 ZF
family TFs
Other
Steinernema monticolum
TFs
50 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy