L898_g18820 (Steinernema monticolum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 L898_g18820 T154749_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
blmp-1
M08103_2.00
Caenorhabditis elegans
YTYTCHYTTTY

RAAARDGARAR
ChIP-seq
Mathelier et al.(2014)
MA0537.1
0.770 0.825
blmp-1
M08195_2.00
Caenorhabditis elegans
VACTTTCDCY

RGHGAAAGTB
ChIP-seq
Contrino et al.(2012)
Mw137
0.770 0.825
Blimp-1
M03692_2.00
Drosophila melanogaster
NNYACTTTCVYYN

NRRBGAAAGTRNN
SELEX
Nitta et al.(2015)
Blimp-1_1
0.759 0.816
Blimp-1
M06141_2.00
Drosophila melanogaster
ACTTTCACTTTY

RAAAGTGAAAGT
B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625
0.759 0.816
Blimp-1
M06142_2.00
Drosophila melanogaster
RCTTTCMCTTTY

RAAAGKGAAAGY
B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625
0.759 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L898_g18820.t1 C2H2 ZF 578 600
L898_g18820.t1 C2H2 ZF 606 628
L898_g18820.t1 C2H2 ZF 634 656
L898_g18820.t1 C2H2 ZF 662 684
L898_g18820.t1 C2H2 ZF 690 711
L898_g18820.t2 C2H2 ZF 631 653
L898_g18820.t2 C2H2 ZF 659 681
L898_g18820.t2 C2H2 ZF 687 709
L898_g18820.t2 C2H2 ZF 715 737
L898_g18820.t2 C2H2 ZF 743 764

Links

Other C2H2 ZF family TFs
Other Steinernema monticolum TFs

Invalid Input OrderBy

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action