maker-nMf.1.1.scaf05782-augustus-gene-0.8 (Meloidogyne floridensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 maker-nMf.1.1.scaf05782-augustus-gene-0.8 T154856_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
che-1
M00609_2.00 		Caenorhabditis elegans
NGAARCCHNN
NNDGGYTTCN		 PBM
Narasimhan et al.(2015)
pTH10015 		0.770 0.841
che-1
M08451_2.00 		Caenorhabditis elegans
SGYTTC
GAARCS		 COMPILED
Mathelier et al.(2014)
MA0260.1 		0.770 0.841
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
maker-nMf.1.1.scaf05782-augustus-gene-0.8-mRNA-1 C2H2 ZF 1 19
maker-nMf.1.1.scaf05782-augustus-gene-0.8-mRNA-1 C2H2 ZF 25 47
maker-nMf.1.1.scaf05782-augustus-gene-0.8-mRNA-1 C2H2 ZF 53 75
maker-nMf.1.1.scaf05782-augustus-gene-0.8-mRNA-1 C2H2 ZF 81 103

Links

Other C2H2 ZF family TFs
Other Meloidogyne floridensis TFs

Invalid Input OrderBy

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action