MhA1_Contig3096.frz3.gene1 (Meloidogyne hapla)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 MhA1_Contig3096.frz3.gene1 T154977_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
klu
M03680_2.00
Drosophila melanogaster
HCCRCCCACGCAH

DTGCGTGGGYGGD
SELEX
Nitta et al.(2015)
klu_1
0.773 0.793
klu
M03681_2.00
Drosophila melanogaster
YMCGCCCMCGCAH

DTGCGKGGGCGKR
SELEX
Nitta et al.(2015)
klu_2
0.773 0.793
klu
M06114_2.00
Drosophila melanogaster
MCACCCMCRCA

TGYGKGGGTGK
B1H
Zhu et al.(2011)
klu_SANGER_10_FBgn0013469
0.773 0.793
klu
M06115_2.00
Drosophila melanogaster
NNNNMCACCCMCRCN

NGYGKGGGTGKNNNN
B1H
Zhu et al.(2011)
klu_SOLEXA_5_FBgn0013469
0.773 0.793
klu-1
M00637_2.00
Caenorhabditis elegans
CDCCCMCV

BGKGGGHG
PBM
Narasimhan et al.(2015)
pTH9355
0.761 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MhA1_Contig3096.frz3.gene1 C2H2 ZF 550 573
MhA1_Contig3096.frz3.gene1 C2H2 ZF 588 610
MhA1_Contig3096.frz3.gene1 C2H2 ZF 616 638
MhA1_Contig3096.frz3.gene1 C2H2 ZF 644 666

Links

Other C2H2 ZF family TFs
Other Meloidogyne hapla TFs

Invalid Input OrderBy

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action