CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MhA1_Contig599.frz3.gene7
(
Meloidogyne hapla
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
MhA1_Contig599.frz3.gene7
T154988_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sptf-3
M00632_2.00
Caenorhabditis elegans
NNMCGCCCMY
RKGGGCGKNN
PBM
Narasimhan et al.(2015)
pTH9394
0.795
0.855
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MhA1_Contig599.frz3.gene7
C2H2 ZF
487
509
HICHICNKTYGKTSHLRAHLRGH
MhA1_Contig599.frz3.gene7
C2H2 ZF
515
539
FACDWPACPRRFTRSDELQRHRRTH
MhA1_Contig599.frz3.gene7
C2H2 ZF
545
567
FNCQQCGKRFMRSDHLTKHVRTH
Links
Other
C2H2 ZF
family TFs
Other
Meloidogyne hapla
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy