nAv.1.0.1.g00595 (Acanthocheilonema viteae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 nAv.1.0.1.g00595 T155002_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
erm
M03686_2.00 		Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA		 SELEX
Nitta et al.(2015)
CG31670_1 		0.756 0.841
erm
M06128_2.00 		Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM		 B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375 		0.756 0.841
erm
M06129_2.00 		Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV		 B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375 		0.756 0.841
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nAv.1.0.1.t00595-RA C2H2 ZF 47 69
nAv.1.0.1.t00595-RA C2H2 ZF 75 97
nAv.1.0.1.t00595-RA C2H2 ZF 103 125
nAv.1.0.1.t00595-RA C2H2 ZF 131 153
nAv.1.0.1.t00595-RA C2H2 ZF 159 181
nAv.1.0.1.t00595-RA C2H2 ZF 187 210

Links

Other C2H2 ZF family TFs
Other Acanthocheilonema viteae TFs

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77 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action