CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nAv.1.0.1.g05136
(
Acanthocheilonema viteae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
nAv.1.0.1.g05136
T155021_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KLF6
M04400_2.00
Homo sapiens
NVMCACRCCCH
DGGGYGTGKBN
SELEX
Yin et al.(2017)
KLF6_eDBD_HT-SELEX
0.761
0.739
KLF6
M08857_2.00
Homo sapiens
BYBYVNBCYMCDCCCYBBN
NVVRGGGHGKRGVNBRVRV
Misc
Kulakovskiy et al.(2013)
KLF6_HUMAN.H11MO.0.A
0.761
0.739
Klf6
M08962_2.00
Mus musculus
BYBYVNBCYMCDCCCYBBN
NVVRGGGHGKRGVNBRVRV
Misc
Kulakovskiy et al.(2013)
KLF6_MOUSE.H11MO.0.B
0.761
0.739
KLF6
M10113_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CPBP_Q6
0.761
0.739
KLF6
M04401_2.00
Homo sapiens
NRCCACGCCCH
DGGGCGTGGYN
SELEX
Yin et al.(2017)
KLF6_eDBD_Methyl-HT-SELEX
0.761
0.739
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nAv.1.0.1.t05136-RA
C2H2 ZF
145
169
HECVHPGCSKKYSKSSHLKAHMRIH
nAv.1.0.1.t05136-RA
C2H2 ZF
175
199
YRCSWPSCLWKFARSDELTRHYRKH
nAv.1.0.1.t05136-RA
C2H2 ZF
205
227
FNCTLCCRSFSRSDHLNLHVKRH
Links
Other
C2H2 ZF
family TFs
Other
Acanthocheilonema viteae
TFs
118 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy