CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NBR_0002088601
(
Nippostrongylus brasiliensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
NBR_0002088601
T155117_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
blmp-1
M08103_2.00
Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR
ChIP-seq
Mathelier et al.(2014)
MA0537.1
0.797
0.904
blmp-1
M08195_2.00
Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB
ChIP-seq
Contrino et al.(2012)
Mw137
0.797
0.904
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
NBR_0002088601-mRNA-1
C2H2 ZF
39
61
YACKECHKTFGQLSNLKVHVRTH
NBR_0002088601-mRNA-1
C2H2 ZF
67
89
FKCTVCGKEFTQLAHLQKHNLVH
NBR_0002088601-mRNA-1
C2H2 ZF
95
117
HRCDICDKRFSSTSNLKTHLRLH
NBR_0002088601-mRNA-1
C2H2 ZF
123
145
YACDVCSAKFTQYVHLRLHKRLH
NBR_0002088601-mRNA-1
C2H2 ZF
151
172
YACLSCGKKYISPSGLRTHWKT
Links
Other
C2H2 ZF
family TFs
Other
Nippostrongylus brasiliensis
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy