NBR_0002088601 (Nippostrongylus brasiliensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 NBR_0002088601 T155117_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
blmp-1
M08103_2.00 		Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR		 ChIP-seq
Mathelier et al.(2014)
MA0537.1 		0.797 0.904
blmp-1
M08195_2.00 		Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB		 ChIP-seq
Contrino et al.(2012)
Mw137 		0.797 0.904
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
NBR_0002088601-mRNA-1 C2H2 ZF 39 61
NBR_0002088601-mRNA-1 C2H2 ZF 67 89
NBR_0002088601-mRNA-1 C2H2 ZF 95 117
NBR_0002088601-mRNA-1 C2H2 ZF 123 145
NBR_0002088601-mRNA-1 C2H2 ZF 151 172

Links

Other C2H2 ZF family TFs
Other Nippostrongylus brasiliensis TFs

Invalid Input OrderBy

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action