PTRK_0000195600 (Parastrongyloides trichosuri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PTRK_0000195600 T155718_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
sens
M03666_2.00
Drosophila melanogaster
TGCWSTGATTTATY

RATAAATCASWGCA
SELEX
Nitta et al.(2015)
sens_1
0.790 0.848
sens
M06056_2.00
Drosophila melanogaster
AAATCACDGC

GCHGTGATTT
B1H
Zhu et al.(2011)
sens_SANGER_10_FBgn0002573
0.790 0.848
sens
M06057_2.00
Drosophila melanogaster
NNNNAAATCACRGCH

DGCYGTGATTTNNNN
B1H
Zhu et al.(2011)
sens_SOLEXA_5_FBgn0002573
0.790 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PTRK_0000195600.1 C2H2 ZF 133 155
PTRK_0000195600.1 C2H2 ZF 161 183
PTRK_0000195600.1 C2H2 ZF 189 211
PTRK_0000195600.1 C2H2 ZF 217 240

Links

Other C2H2 ZF family TFs
Other Parastrongyloides trichosuri TFs

Invalid Input OrderBy

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action