RSKR_0000666600 (Rhabditophanes kr3021)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 RSKR_0000666600 T155900_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
KLF6
M04400_2.00
Homo sapiens
NVMCACRCCCH

DGGGYGTGKBN
SELEX
Yin et al.(2017)
KLF6_eDBD_HT-SELEX
0.774 0.773
KLF6
M08857_2.00
Homo sapiens
BYBYVNBCYMCDCCCYBBN

NVVRGGGHGKRGVNBRVRV
Misc
Kulakovskiy et al.(2013)
KLF6_HUMAN.H11MO.0.A
0.774 0.773
Klf6
M08962_2.00
Mus musculus
BYBYVNBCYMCDCCCYBBN

NVVRGGGHGKRGVNBRVRV
Misc
Kulakovskiy et al.(2013)
KLF6_MOUSE.H11MO.0.B
0.774 0.773
KLF6
M10113_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CPBP_Q6
0.774 0.773
KLF6
M04401_2.00
Homo sapiens
NRCCACGCCCH

DGGGCGTGGYN
SELEX
Yin et al.(2017)
KLF6_eDBD_Methyl-HT-SELEX
0.774 0.773
Klf7
M00134_2.00
Mus musculus
NHHMCRCCCH

DGGGYGKDDN
PBM
Badis et al.(2009)
Klf7_0974
0.762 0.788
KLF7
M08298_2.00
Homo sapiens
VVCHMCGCCCH

DGGGCGKDGBB
ChIP-seq
Schmitges et al.(2016)
O75840.MEME
0.762 0.788
dar1
M06171_2.00
Drosophila melanogaster
RMCACACCCWH

DWGGGTGTGKY
B1H
Zhu et al.(2011)
CG12029_SANGER_10_FBgn0035454
0.761 0.758
dar1
M06172_2.00
Drosophila melanogaster
NNNRCCACRCCCHNN

NNDGGGYGTGGYNNN
B1H
Zhu et al.(2011)
CG12029_SOLEXA_5_FBgn0035454
0.761 0.758
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000666600.1 C2H2 ZF 664 683
RSKR_0000666600.1 C2H2 ZF 689 713
RSKR_0000666600.1 C2H2 ZF 719 741

Links

Other C2H2 ZF family TFs
Other Rhabditophanes kr3021 TFs

Invalid Input OrderBy

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action