CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RSKR_0000732300
(
Rhabditophanes kr3021
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
RSKR_0000732300
T155906_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sptf-3
M00632_2.00
Caenorhabditis elegans
NNMCGCCCMY
RKGGGCGKNN
PBM
Narasimhan et al.(2015)
pTH9394
0.766
0.739
SP3
M02910_2.00
Homo sapiens
VCCMCRCCCMY
RKGGGYGKGGB
SELEX
Jolma et al.(2013)
SP3_1
0.763
0.739
SP3
M04558_2.00
Homo sapiens
NRCCACGCCCMYH
DRKGGGCGTGGYN
SELEX
Yin et al.(2017)
SP3_eDBD_HT-SELEX
0.763
0.739
SP3
M08920_2.00
Homo sapiens
NBBNVSCCCCKCCCMBBBNN
NNVVVKGGGMGGGGSBNVVN
Misc
Kulakovskiy et al.(2013)
SP3_HUMAN.H11MO.0.B
0.763
0.739
Sp3
M08978_2.00
Mus musculus
NBBNVSCCCCKCCCMBBBNN
NNVVVKGGGMGGGGSBNVVN
Misc
Kulakovskiy et al.(2013)
SP3_MOUSE.H11MO.0.B
0.763
0.739
SP3
M10263_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP3_Q3_01
0.763
0.739
SP3
M10264_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP3_Q3
0.763
0.739
SP3
M04559_2.00
Homo sapiens
NRCCMCGCCCMCH
DGKGGGCGKGGYN
SELEX
Yin et al.(2017)
SP3_eDBD_Methyl-HT-SELEX
0.763
0.739
SP4
M02879_2.00
Homo sapiens
NWRGCCACGCCCMCHYN
NRDGKGGGCGTGGCYWN
SELEX
Jolma et al.(2013)
SP4_1
0.760
0.739
SP4
M08296_2.00
Homo sapiens
NNVGCYCCKCCYMYH
DRKRGGMGGRGCBNN
ChIP-seq
Schmitges et al.(2016)
Q02446.MEME
0.760
0.739
SP4
M08873_2.00
Homo sapiens
BYHDKCYCCGCCYYYHBSBB
VVSVDRRRGGCGGRGMHDRV
Misc
Kulakovskiy et al.(2013)
SP4_HUMAN.H11MO.0.A
0.760
0.739
SP4
M10165_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP4_Q3
0.760
0.739
SP4
M10166_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP4_Q5
0.760
0.739
Spps
M06159_2.00
Drosophila melanogaster
KWDRCCMCGCCCMBH
DVKGGGCGKGGYHWM
B1H
Zhu et al.(2011)
CG5669_SANGER_10_FBgn0039169
0.760
0.725
Spps
M06160_2.00
Drosophila melanogaster
BDDGCCMCGCCCMYN
NRKGGGCGKGGCHHV
B1H
Zhu et al.(2011)
CG5669_SOLEXA_5_FBgn0039169
0.760
0.725
Sp1
M00765_2.00
Mus musculus
NMCGCCCMY
RKGGGCGKN
PBM
Weirauch et al.(2013)
pTH0978
0.760
0.710
SP1
M02921_2.00
Homo sapiens
RCCMCDCCCMH
DKGGGHGKGGY
SELEX
Jolma et al.(2013)
SP1_1
0.760
0.710
SP1
M04605_2.00
Homo sapiens
NWRRCCACGCCCMCH
DGKGGGCGTGGYYWN
SELEX
Yin et al.(2017)
SP1_eDBD_HT-SELEX
0.760
0.710
SP1
M08096_2.00
Homo sapiens
BYCCCKCCCCY
RGGGGMGGGRV
ChIP-seq
Mathelier et al.(2014)
MA0079.3
0.760
0.710
SP1
M08363_2.00
Homo sapiens
CCCHNBCYCCDCCCY
RGGGHGGRGVNDGGG
ChIP-seq
Schmitges et al.(2016)
P08047.MEME
0.760
0.710
SP1
M08938_2.00
Homo sapiens
BCSSSBCCHVGCCCCGCCCCYN
NRGGGGCGGGGCBDGGVSSSGV
Misc
Kulakovskiy et al.(2013)
SP1_HUMAN.H11MO.0.A
0.760
0.710
Sp1
M08963_2.00
Mus musculus
CCCBKCYCCKCCCCCNBCYCSBSC
GSVSGRGVNGGGGGMGGRGMVGGG
Misc
Kulakovskiy et al.(2013)
SP1_MOUSE.H11MO.0.A
0.760
0.710
SP1
M10294_2.00
Homo sapiens
DSCMHGCCYH
DRGGCDKGSH
Transfac
Matys et al.(2006)
V$SP1_01
0.760
0.710
SP1
M10295_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_02
0.760
0.710
SP1
M10296_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_07
0.760
0.710
SP1
M10297_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_08
0.760
0.710
SP1
M10298_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_Q2_02
0.760
0.710
SP1
M10299_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_Q3
0.760
0.710
SP1
M10300_2.00
Homo sapiens
VVCCCCGCCCMBN
NVKGGGCGGGGBB
Transfac
Matys et al.(2006)
V$SP1_Q6
0.760
0.710
SP1
M04606_2.00
Homo sapiens
NWRGCCMCGCCCMYH
DRKGGGCGKGGCYWN
SELEX
Yin et al.(2017)
SP1_eDBD_Methyl-HT-SELEX
0.760
0.710
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
RSKR_0000732300.1
C2H2 ZF
323
345
HICSICKKSYGKTSHLRAHIRGH
RSKR_0000732300.1
C2H2 ZF
351
375
FACDHQNCPKAFTRSDELQRHRRIH
RSKR_0000732300.1
C2H2 ZF
381
403
FVCSVCSKGFIRSDHLSKHLKTH
Links
Other
C2H2 ZF
family TFs
Other
Rhabditophanes kr3021
TFs
271 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy