RSKR_0000732400 (Rhabditophanes kr3021)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 RSKR_0000732400 T155907_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Sp4
M01862_2.00
Mus musculus
NMCGCCCMY

RKGGGCGKN
PBM
Weirauch et al.(2014)
pTH4998
0.764 0.768
Sp4
M00133_2.00
Mus musculus
HMCGCCCMYN

NRKGGGCGKD
PBM
Badis et al.(2009)
Sp4_1011
0.764 0.768
Sp4
M05859_2.00
Mus musculus
DGNYMCGCCCHNN

NNDGGGCGKRNCH
SMiLE-seq
Isakova et al.(2017)
SP4
0.764 0.768
Sp4
M08975_2.00
Mus musculus
BYHDKCYCCGCCYYYHBSBB

VVSVDRRRGGCGGRGMHDRV
Misc
Kulakovskiy et al.(2013)
SP4_MOUSE.H11MO.0.B
0.764 0.768
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000732400.1 C2H2 ZF 293 315
RSKR_0000732400.1 C2H2 ZF 321 345
RSKR_0000732400.1 C2H2 ZF 351 373

Links

Other C2H2 ZF family TFs
Other Rhabditophanes kr3021 TFs

Invalid Input OrderBy

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action