RSKR_0001155900 (Rhabditophanes kr3021)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 RSKR_0001155900 T155932_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ref-2
M00621_2.00 		Caenorhabditis elegans
CMYRSNGNBH
DVNCNSYRKG		 PBM
Narasimhan et al.(2015)
pTH9089 		0.781 0.761
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.755 0.761
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.755 0.761
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.755 0.761
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.755 0.761
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.755 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0001155900.1 C2H2 ZF 173 200
RSKR_0001155900.1 C2H2 ZF 206 228
RSKR_0001155900.1 C2H2 ZF 234 258
RSKR_0001155900.1 C2H2 ZF 264 288

Links

Other C2H2 ZF family TFs
Other Rhabditophanes kr3021 TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PTRK_0000799900 Parastrongyloides trichosuri PTRK_0000799900 I 0.790
CRE00505 Caenorhabditis remanei CRE00505 I 0.783
ref-2 Caenorhabditis elegans WBGene00004335 D 0.781
SSTP_0000201100 Strongyloides stercoralis SSTP_0000201100 I 0.778
SVE_0347600 Strongyloides venezuelensis SVE_0347600 I 0.778
SPAL_0001746600 Strongyloides papillosus SPAL_0001746600 I 0.778
nLs.2.1.2.g02824 Litomosoides sigmodontis nLs.2.1.2.g02824 I 0.770
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I 0.767
Ogr17257 Ophisaurus gracilis Ogr17257 I 0.767
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I 0.767
csin109208 Clonorchis sinensis csin109208 I 0.766
T265_00048 Opisthorchis viverrini T265_00048 I 0.766
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.765
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.765
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I 0.765
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.765
zic6 Danio rerio ENSDARG00000071496 I 0.765
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.764
SMU15031708 Schmidtea mediterranea SMU15031708 I 0.763
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I 0.762
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.762
SMU15033928 Schmidtea mediterranea SMU15033928 I 0.760
SNAPOd2T00002718001 Oikopleura dioica SNAPOd2T00002718001 I 0.760
HelroG77001 Helobdella robusta HelroG77001 N 0.760
CJA16978 Caenorhabditis japonica CJA16978 I 0.759
ENSXMAG00000014868 Xiphophorus maculatus ENSXMAG00000014868 I 0.759
ENSPFOG00000023954 Poecilia formosa ENSPFOG00000023954 I 0.759
ZIC5 Sus scrofa ENSSSCG00000009521 I 0.758
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I 0.758
WBGene00239980 Onchocerca volvulus WBGene00239980 I 0.758
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I 0.758
NEMVEDRAFT_v1g121215 Nematostella vectensis NEMVEDRAFT_v1g121215 I 0.758
TCLT_0000586501 Thelazia callipaeda TCLT_0000586501 I 0.758
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I 0.758
ZIC5 Ochotona princeps ENSOPRG00000007526 I 0.758
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I 0.758
CGI_10016117 Crassostrea gigas CGI_10016117 I 0.756
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.756
BXY_1106000 Bursaphelenchus xylophilus BXY_1106000 I 0.756
nRc.2.0.1.g22468 Romanomermis culicivorax nRc.2.0.1.g22468 I 0.756
TMUE_s0101002100 Trichuris muris TMUE_s0101002100 I 0.755
MDOA000052 Musca domestica MDOA000052 I 0.755
GJ11051 Drosophila virilis FBgn0198317 I 0.755
GG12590 Drosophila erecta FBgn0104878 I 0.755
GH23039 Drosophila grimshawi FBgn0130496 I 0.755
GF18915 Drosophila ananassae FBgn0095929 I 0.755
GA10924 Drosophila pseudoobscura FBgn0070980 I 0.755
opa Drosophila melanogaster FBgn0003002 D 0.755
GI10245 Drosophila mojavensis FBgn0133010 I 0.755
GL21621 Drosophila persimilis FBgn0159214 I 0.755
GK13239 Drosophila willistoni FBgn0215248 I 0.755
KGM_22387 Danaus plexippus KGM_22387 I 0.755
AGAP001291 Anopheles gambiae AGAP001291 I 0.755
GD19752 Drosophila simulans FBgn0191241 I 0.755
GM10780 Drosophila sechellia FBgn0165726 I 0.755
TC010234 Tribolium castaneum TC010234 I 0.755