CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold942-EXSNAP2012.1
(
Pristionchus exspectatus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
scaffold942-EXSNAP2012.1
T156149_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
lin-29
M00613_2.00
Caenorhabditis elegans
WTTTTTTN
NAAAAAAW
PBM
Narasimhan et al.(2015)
pTH9930
0.768
0.921
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold942-EXSNAP2012.1
C2H2 ZF
37
64
YKCTQCIKVGHDKSFANSSYLSQHMRIH
scaffold942-EXSNAP2012.1
C2H2 ZF
72
93
PCQYCGKKFTQLSHLQQHIRTH
scaffold942-EXSNAP2012.1
C2H2 ZF
99
123
YRCKYAGCEKAFSQLSNLQSHSRCH
scaffold942-EXSNAP2012.1
C2H2 ZF
129
151
FKCNSCYKCFADEQSLLEHIPKH
scaffold942-EXSNAP2012.1
C2H2 ZF
163
185
HICPFCGKSYTQATYLSKHMTKH
Links
Other
C2H2 ZF
family TFs
Other
Pristionchus exspectatus
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
scaffold83-EXSNAP2012.3
Pristionchus exspectatus
scaffold83-EXSNAP2012.3
I
0.827
Ppa-lin-29
Pristionchus pacificus
PPA19410
I
0.827
HCOI02104300
Haemonchus contortus
HCOI02104300
I
0.810
ANCCEY_04897
Ancylostoma ceylanicum
ANCCEY_04897
I
0.810
nRc.2.0.1.g29712
Romanomermis culicivorax
nRc.2.0.1.g29712
I
0.798
ACYPI006067
Acyrthosiphon pisum
ACYPI006067
N
0.779
CBG02753
Caenorhabditis briggsae
CBG02753
I
0.768
lin-29
Caenorhabditis elegans
WBGene00003015
D
0.768
CRE02078
Caenorhabditis remanei
CRE02078
I
0.768
CJA15666
Caenorhabditis japonica
CJA15666
I
0.760