scaffold942-EXSNAP2012.1 (Pristionchus exspectatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 scaffold942-EXSNAP2012.1 T156149_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
lin-29
M00613_2.00
Caenorhabditis elegans
WTTTTTTN

NAAAAAAW
PBM
Narasimhan et al.(2015)
pTH9930
0.768 0.921
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold942-EXSNAP2012.1 C2H2 ZF 37 64
scaffold942-EXSNAP2012.1 C2H2 ZF 72 93
scaffold942-EXSNAP2012.1 C2H2 ZF 99 123
scaffold942-EXSNAP2012.1 C2H2 ZF 129 151
scaffold942-EXSNAP2012.1 C2H2 ZF 163 185

Links

Other C2H2 ZF family TFs
Other Pristionchus exspectatus TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
scaffold83-EXSNAP2012.3 Pristionchus exspectatus scaffold83-EXSNAP2012.3 I 0.827
Ppa-lin-29 Pristionchus pacificus PPA19410 I 0.827
HCOI02104300 Haemonchus contortus HCOI02104300 I 0.810
ANCCEY_04897 Ancylostoma ceylanicum ANCCEY_04897 I 0.810
nRc.2.0.1.g29712 Romanomermis culicivorax nRc.2.0.1.g29712 I 0.798
ACYPI006067 Acyrthosiphon pisum ACYPI006067 N 0.779
CBG02753 Caenorhabditis briggsae CBG02753 I 0.768
lin-29 Caenorhabditis elegans WBGene00003015 D 0.768
CRE02078 Caenorhabditis remanei CRE02078 I 0.768
CJA15666 Caenorhabditis japonica CJA15666 I 0.760