CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMRZ_0001128801
(
Schistosoma margrebowiei
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SMRZ_0001128801
T156286_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SP8
M02898_2.00
Homo sapiens
VMCACBCCCMCH
DGKGGGVGTGKB
SELEX
Jolma et al.(2013)
SP8_1
0.757
0.783
SP8
M04517_2.00
Homo sapiens
NMCMCGCCCMYH
DRKGGGCGKGKN
SELEX
Yin et al.(2017)
SP8_eDBD_HT-SELEX
0.757
0.783
SP9
M04645_2.00
Homo sapiens
VMCMCGCCCMYH
DRKGGGCGKGKB
SELEX
Yin et al.(2017)
SP9_eDBD_HT-SELEX
0.757
0.783
SP8
M04518_2.00
Homo sapiens
RHCACGCCCMYH
DRKGGGCGTGDY
SELEX
Yin et al.(2017)
SP8_eDBD_Methyl-HT-SELEX
0.757
0.783
SP9
M04646_2.00
Homo sapiens
RYCACGCCCMYH
DRKGGGCGTGRY
SELEX
Yin et al.(2017)
SP9_eDBD_Methyl-HT-SELEX
0.757
0.783
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMRZ_0001128801-mRNA-1
C2H2 ZF
447
469
HLCNLCGKTYSKTSHLKAHLRWH
SMRZ_0001128801-mRNA-1
C2H2 ZF
475
499
FRCIYELCSKAFTRSDELQRHIRTH
SMRZ_0001128801-mRNA-1
C2H2 ZF
505
527
FTCIICNKRFMRSDHLSKHRKTH
Links
Other
C2H2 ZF
family TFs
Other
Schistosoma margrebowiei
TFs
142 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy