CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMRZ_0002540101
(
Schistosoma margrebowiei
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SMRZ_0002540101
T156322_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMRZ_0002540101-mRNA-1
C2H2 ZF
256
280
HPCTYRGCGKVFFSRTSLIYHKQSH
SMRZ_0002540101-mRNA-1
C2H2 ZF
286
310
YKCTYPNCGLTFCNEALLKTHIQLH
SMRZ_0002540101-mRNA-1
C2H2 ZF
319
343
FSCTLPGCNKVFVTRECLIEHIRIH
SMRZ_0002540101-mRNA-1
C2H2 ZF
349
373
FICDYPGCTHRFARRCNLFAHKRVH
SMRZ_0002540101-mRNA-1
C2H2 ZF
382
406
YHCIHAGCGKTFLYSRSLTEHMNVH
SMRZ_0002540101-mRNA-1
C2H2 ZF
412
436
YVCDYPGCEKSFTSKSYLYAHRRIH
Links
Other
C2H2 ZF
family TFs
Other
Schistosoma margrebowiei
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SMTD_0000892601
Schistosoma mattheei
SMTD_0000892601
N
0.827
SCUD_0001644601
Schistosoma curassoni
SCUD_0001644601
N
0.827
A_00150
Schistosoma haematobium
A_00150
N
0.827
Sjc_0072480
Schistosoma japonicum
Sjc_0072480
N
0.817
Smp_046360
Schistosoma mansoni
Smp_046360
N
0.773
SROB_0001223201
Schistosoma rodhaini
SROB_0001223201
N
0.768