SPAL_0000884500 (Strongyloides papillosus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SPAL_0000884500 T156516_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Blimp-1
M03692_2.00
Drosophila melanogaster
NNYACTTTCVYYN

NRRBGAAAGTRNN
SELEX
Nitta et al.(2015)
Blimp-1_1
0.756 0.798
Blimp-1
M06141_2.00
Drosophila melanogaster
ACTTTCACTTTY

RAAAGTGAAAGT
B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625
0.756 0.798
Blimp-1
M06142_2.00
Drosophila melanogaster
RCTTTCMCTTTY

RAAAGKGAAAGY
B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625
0.756 0.798
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SPAL_0000884500.1 C2H2 ZF 638 660
SPAL_0000884500.1 C2H2 ZF 666 688
SPAL_0000884500.1 C2H2 ZF 694 716
SPAL_0000884500.1 C2H2 ZF 722 744
SPAL_0000884500.1 C2H2 ZF 750 771

Links

Other C2H2 ZF family TFs
Other Strongyloides papillosus TFs

Invalid Input OrderBy

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action