CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SPER_0003711101
(
Spirometra erinaceieuropaei
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SPER_0003711101
T156879_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
erm
M03686_2.00
Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA
SELEX
Nitta et al.(2015)
CG31670_1
0.757
0.826
erm
M06128_2.00
Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM
B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375
0.757
0.826
erm
M06129_2.00
Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV
B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375
0.757
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPER_0003711101-mRNA-1
C2H2 ZF
112
134
FVCPHCDKVFNAHYNLTRHMPIH
SPER_0003711101-mRNA-1
C2H2 ZF
140
162
FICKICNKGFRQASTLCRHKIIH
SPER_0003711101-mRNA-1
C2H2 ZF
168
190
HVCKTCGKAFNRSSTLNTHMRIH
SPER_0003711101-mRNA-1
C2H2 ZF
196
218
FICEVCNKGFHQKGNYKNHKLTH
SPER_0003711101-mRNA-1
C2H2 ZF
224
246
YKCPLCHKAFHQIYNLTFHMHTH
SPER_0003711101-mRNA-1
C2H2 ZF
252
275
FVCSCCGKGFCRNFDLKKHFRKLH
Links
Other
C2H2 ZF
family TFs
Other
Spirometra erinaceieuropaei
TFs
95 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy