CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SSLN_0000272801
(
Schistocephalus solidus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SSLN_0000272801
T157032_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sens
M03666_2.00
Drosophila melanogaster
TGCWSTGATTTATY
RATAAATCASWGCA
SELEX
Nitta et al.(2015)
sens_1
0.779
0.783
sens
M06056_2.00
Drosophila melanogaster
AAATCACDGC
GCHGTGATTT
B1H
Zhu et al.(2011)
sens_SANGER_10_FBgn0002573
0.779
0.783
sens
M06057_2.00
Drosophila melanogaster
NNNNAAATCACRGCH
DGCYGTGATTTNNNN
B1H
Zhu et al.(2011)
sens_SOLEXA_5_FBgn0002573
0.779
0.783
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SSLN_0000272801-mRNA-1
C2H2 ZF
489
511
FRCPHCSKTFKRSSTLSTHLLIH
SSLN_0000272801-mRNA-1
C2H2 ZF
517
539
YPCEYCGKRFHQKSDMKKHTYIH
SSLN_0000272801-mRNA-1
C2H2 ZF
554
576
YKCVLCGKTFSQSSNLITHSRKH
SSLN_0000272801-mRNA-1
C2H2 ZF
582
605
FSCAFCSRAFQRKVDLRRHTETQH
Links
Other
C2H2 ZF
family TFs
Other
Schistocephalus solidus
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy