CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SVE_1713000
(
Strongyloides venezuelensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SVE_1713000
T157432_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Blimp-1
M03692_2.00
Drosophila melanogaster
NNYACTTTCVYYN
NRRBGAAAGTRNN
SELEX
Nitta et al.(2015)
Blimp-1_1
0.756
0.798
Blimp-1
M06141_2.00
Drosophila melanogaster
ACTTTCACTTTY
RAAAGTGAAAGT
B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625
0.756
0.798
Blimp-1
M06142_2.00
Drosophila melanogaster
RCTTTCMCTTTY
RAAAGKGAAAGY
B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625
0.756
0.798
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SVE_1713000.1
C2H2 ZF
640
662
YECKECKKTFGQLSNLKVHFRTH
SVE_1713000.1
C2H2 ZF
668
690
FTCHICTKAFTQLAHLQKHLLVH
SVE_1713000.1
C2H2 ZF
696
718
HQCHVCEKRFSSTSNLKTHLRLH
SVE_1713000.1
C2H2 ZF
724
746
YRCDLCEAKFTQHVHLKLHKRLH
SVE_1713000.1
C2H2 ZF
752
773
FKCKICSKAYISPSGLRTHWKT
Links
Other
C2H2 ZF
family TFs
Other
Strongyloides venezuelensis
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy