TMUE_s0064002300 (Trichuris muris)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 TMUE_s0064002300 T157905_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Blimp-1
M03692_2.00
Drosophila melanogaster
NNYACTTTCVYYN

NRRBGAAAGTRNN
SELEX
Nitta et al.(2015)
Blimp-1_1
0.772 0.807
Blimp-1
M06141_2.00
Drosophila melanogaster
ACTTTCACTTTY

RAAAGTGAAAGT
B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625
0.772 0.807
Blimp-1
M06142_2.00
Drosophila melanogaster
RCTTTCMCTTTY

RAAAGKGAAAGY
B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625
0.772 0.807
blmp-1
M08103_2.00
Caenorhabditis elegans
YTYTCHYTTTY

RAAARDGARAR
ChIP-seq
Mathelier et al.(2014)
MA0537.1
0.757 0.798
blmp-1
M08195_2.00
Caenorhabditis elegans
VACTTTCDCY

RGHGAAAGTB
ChIP-seq
Contrino et al.(2012)
Mw137
0.757 0.798
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TMUE_s0064002300 C2H2 ZF 517 539
TMUE_s0064002300 C2H2 ZF 545 567
TMUE_s0064002300 C2H2 ZF 573 595
TMUE_s0064002300 C2H2 ZF 601 623
TMUE_s0064002300 C2H2 ZF 629 650

Links

Other C2H2 ZF family TFs
Other Trichuris muris TFs

Invalid Input OrderBy

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action