TMUE_s0101002100 (Trichuris muris)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 TMUE_s0101002100 T157919_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
opa
M03668_2.00
Drosophila melanogaster
BVCCCCCCRYNGHB

VDCNRYGGGGGGBV
SELEX
Nitta et al.(2015)
opa_1
0.804 0.924
opa
M05861_2.00
Drosophila melanogaster
VCCCCCCRYNGNK

MNCNRYGGGGGGB
SMiLE-seq
Isakova et al.(2017)
Opa
0.804 0.924
opa
M06468_2.00
Drosophila melanogaster
GMCCCCCCGCDG

CHGCGGGGGGKC
B1H
Mathelier et al.(2014)
MA0456.1
0.804 0.924
opa
M06062_2.00
Drosophila melanogaster
GMCCCCCCRCDG

CHGYGGGGGGKC
B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002
0.804 0.924
opa
M06063_2.00
Drosophila melanogaster
MKVMMCCCCMCYR

YRGKGGGGKKBMK
B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002
0.804 0.924
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TMUE_s0101002100 C2H2 ZF 258 285
TMUE_s0101002100 C2H2 ZF 291 315
TMUE_s0101002100 C2H2 ZF 321 345
TMUE_s0101002100 C2H2 ZF 351 375

Links

Other C2H2 ZF family TFs
Other Trichuris muris TFs

Invalid Input OrderBy

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action