CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TMUE_s0101002100
(
Trichuris muris
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
TMUE_s0101002100
T157919_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
opa
M03668_2.00
Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV
SELEX
Nitta et al.(2015)
opa_1
0.804
0.924
opa
M05861_2.00
Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB
SMiLE-seq
Isakova et al.(2017)
Opa
0.804
0.924
opa
M06468_2.00
Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC
B1H
Mathelier et al.(2014)
MA0456.1
0.804
0.924
opa
M06062_2.00
Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC
B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002
0.804
0.924
opa
M06063_2.00
Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK
B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002
0.804
0.924
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
TMUE_s0101002100
C2H2 ZF
258
285
HACFWKNCPRGGKPFKAKYKLVNHIRVH
TMUE_s0101002100
C2H2 ZF
291
315
FACPFPSCGKVFARSENLKIHKRTH
TMUE_s0101002100
C2H2 ZF
321
345
FKCEFDGCDRRFANSSDRKKHSHVH
TMUE_s0101002100
C2H2 ZF
351
375
YYCRADGCNKSYTHPSSLRKHMKIH
Links
Other
C2H2 ZF
family TFs
Other
Trichuris muris
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy