TTAC_0000342701 (Hydatigera taeniaeformis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 TTAC_0000342701 T158166_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SP8
M02898_2.00
Homo sapiens
VMCACBCCCMCH

DGKGGGVGTGKB
SELEX
Jolma et al.(2013)
SP8_1
0.787 0.884
SP8
M04517_2.00
Homo sapiens
NMCMCGCCCMYH

DRKGGGCGKGKN
SELEX
Yin et al.(2017)
SP8_eDBD_HT-SELEX
0.787 0.884
SP8
M04518_2.00
Homo sapiens
RHCACGCCCMYH

DRKGGGCGTGDY
SELEX
Yin et al.(2017)
SP8_eDBD_Methyl-HT-SELEX
0.787 0.884
SP9
M04645_2.00
Homo sapiens
VMCMCGCCCMYH

DRKGGGCGKGKB
SELEX
Yin et al.(2017)
SP9_eDBD_HT-SELEX
0.787 0.870
SP9
M04646_2.00
Homo sapiens
RYCACGCCCMYH

DRKGGGCGTGRY
SELEX
Yin et al.(2017)
SP9_eDBD_Methyl-HT-SELEX
0.787 0.870
Sp1
M03682_2.00
Drosophila melanogaster
HNGCCACGCCCARK

MYTGGGCGTGGCND
SELEX
Nitta et al.(2015)
Sp1_1
0.774 0.870
Sp1
M06117_2.00
Drosophila melanogaster
DHYMCGCCCMY

RKGGGCGKRDH
B1H
Zhu et al.(2011)
Sp1_SANGER_5_FBgn0020378
0.774 0.870
Sp1
M06118_2.00
Drosophila melanogaster
NKHHMCGCCCMYNN

NNRKGGGCGKDDMN
B1H
Zhu et al.(2011)
Sp1_SOLEXA_2.5_FBgn0020378
0.774 0.870
SP3
M02910_2.00
Homo sapiens
VCCMCRCCCMY

RKGGGYGKGGB
SELEX
Jolma et al.(2013)
SP3_1
0.757 0.812
SP3
M04558_2.00
Homo sapiens
NRCCACGCCCMYH

DRKGGGCGTGGYN
SELEX
Yin et al.(2017)
SP3_eDBD_HT-SELEX
0.757 0.812
SP3
M08920_2.00
Homo sapiens
NBBNVSCCCCKCCCMBBBNN

NNVVVKGGGMGGGGSBNVVN
Misc
Kulakovskiy et al.(2013)
SP3_HUMAN.H11MO.0.B
0.757 0.812
SP3
M10263_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP3_Q3_01
0.757 0.812
SP3
M10264_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP3_Q3
0.757 0.812
SP3
M04559_2.00
Homo sapiens
NRCCMCGCCCMCH

DGKGGGCGKGGYN
SELEX
Yin et al.(2017)
SP3_eDBD_Methyl-HT-SELEX
0.757 0.812
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TTAC_0000342701-mRNA-1 C2H2 ZF 218 242
TTAC_0000342701-mRNA-1 C2H2 ZF 248 272
TTAC_0000342701-mRNA-1 C2H2 ZF 278 300

Links

Other C2H2 ZF family TFs
Other Hydatigera taeniaeformis TFs

Invalid Input OrderBy

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action