CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TTRE_0000156401
(
Trichuris trichiura
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
TTRE_0000156401
T158230_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Blimp-1
M03692_2.00
Drosophila melanogaster
NNYACTTTCVYYN
NRRBGAAAGTRNN
SELEX
Nitta et al.(2015)
Blimp-1_1
0.772
0.807
Blimp-1
M06141_2.00
Drosophila melanogaster
ACTTTCACTTTY
RAAAGTGAAAGT
B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625
0.772
0.807
Blimp-1
M06142_2.00
Drosophila melanogaster
RCTTTCMCTTTY
RAAAGKGAAAGY
B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625
0.772
0.807
blmp-1
M08103_2.00
Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR
ChIP-seq
Mathelier et al.(2014)
MA0537.1
0.757
0.807
blmp-1
M08195_2.00
Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB
ChIP-seq
Contrino et al.(2012)
Mw137
0.757
0.807
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
TTRE_0000156401
C2H2 ZF
515
537
YECDRCNKVFGQLSNLKVHMRTH
TTRE_0000156401
C2H2 ZF
543
565
FKCSACGKEFTQLAHLQKHNLVH
TTRE_0000156401
C2H2 ZF
571
593
HRCEVCLKRFSSTSNLKTHLRLH
TTRE_0000156401
C2H2 ZF
599
621
YACDFCPSKFTQFVHLKLHKRLH
TTRE_0000156401
C2H2 ZF
627
648
YICATCNKKYISPSGLRTHWRT
Links
Other
C2H2 ZF
family TFs
Other
Trichuris trichiura
TFs
79 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy