fgenesh1_pm.sca_2_chr3_3_0000229 (Nectria haematococca)
C2H2 ZF,Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2)
PF00172 (Zn_clus) 		IPR007087
IPR001138 		fgenesh1_pm.sca_2_chr3_3_0000229 T158805_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU02173
M01893_2.00 		Neurospora crassa
NNRKTSSGGVNN
NNBCCSSAMYNN		 PBM
Weirauch et al.(2014)
pTH9665 		0.774 0.774
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.sca_2_chr3_3_0000229 C2H2 ZF 104 126
fgenesh1_pm.sca_2_chr3_3_0000229 C2H2 ZF 132 154
fgenesh1_pm.sca_2_chr3_3_0000229 Zinc cluster 174 211

Links

Other C2H2 ZF,Zinc cluster family TFs
Other Nectria haematococca TFs

Invalid Input OrderBy

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action