CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NCU02173
(
Neurospora crassa
)
C2H2 ZF,Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
PF00172 (Zn_clus)
IPR007087
IPR001138
NCU02173
T158806_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU02173
M01893_2.00
Neurospora crassa
NNRKTSSGGVNN
NNBCCSSAMYNN
PBM
Weirauch et al.(2014)
pTH9665
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.700
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01893_2.00
C2H2 ZF
52
74
HVCQICKRVYERADHLTRHLRSH
M01893_2.00
C2H2 ZF
80
102
YQCTRCPKRFNRADLLTRHETTH
M01893_2.00
Zinc cluster
122
160
EACLNCAMSKAKCDDMKPCTRCRLKNLVCETSNKKTPQY
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCU02173
C2H2 ZF
121
143
HVCQICKRVYERADHLTRHLRSH
NCU02173
C2H2 ZF
149
171
YQCTRCPKRFNRADLLTRHETTH
NCU02173
Zinc cluster
191
229
EACLNCAMSKAKCDDMKPCTRCRLKNLVCETSNKKTPQY
Links
Other
C2H2 ZF,Zinc cluster
family TFs
Other
Neurospora crassa
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy