CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SMU15028607
(
Schmidtea mediterranea
)
C2HC ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01530 (zf-C2HC)
IPR002515
SMU15028607
T159525_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ztf-11
M00650_2.00
Caenorhabditis elegans
VAAGTTTN
NAAACTTB
PBM
Narasimhan et al.(2015)
pTH9925
0.842
0.842
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMU15028607
C2HC ZF
74
101
KCPTPGCDGVGHATGLYSHHRSLSGCPR
SMU15028607
C2HC ZF
118
146
KCPTVGCTGRGHVNGNRTSHRSLSGCPIA
Links
Other
C2HC ZF
family TFs
Other
Schmidtea mediterranea
TFs
70 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy