AMTR_s00024p00195160 (Amborella trichopoda)
CBF/NF-Y

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02045 (CBFB_NFYA) IPR001289 AMTR_s00024p00195160 T159740_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NFYA
M08104_2.00
Homo sapiens
NSTGATTGGYB

VRCCAATCASN
ChIP-seq
Mathelier et al.(2014)
MA0060.3
0.714 0.714
NFYA
M09018_2.00
Homo sapiens
YKBYSATTGGYYRV

BYRRCCAATSRVMR
Misc
Kulakovskiy et al.(2013)
NFYA_HUMAN.H11MO.0.A
0.714 0.714
Nfya
M09019_2.00
Mus musculus
YKBYSATTGGYYRV

BYRRCCAATSRVMR
Misc
Kulakovskiy et al.(2013)
NFYA_MOUSE.H11MO.0.A
0.714 0.714
NFYA
M10403_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFYA_02
0.714 0.714
NFYA
M10404_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFYA_Q5
0.714 0.714
NFYA
M10405_2.00
Homo sapiens
NYTGATTGGYTAVH

DBTARCCAATCARN
Transfac
Matys et al.(2006)
V$NFY_C
0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN11167 CBF/NF-Y 87 142

Links

Other CBF/NF-Y family TFs
Other Amborella trichopoda TFs

597 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30198.m000869 Ricinus communis 30198.m000869 I 0.000
AMTR_s00019p00254380 Amborella trichopoda AMTR_s00019p00254380 I 0.000
Aquca_018_00039 Aquilegia coerulea Aquca_018_00039 I 0.000
Aquca_019_00147 Aquilegia coerulea Aquca_019_00147 I 0.000
BHLH27 Arabidopsis thaliana AT4G29930 N 0.000
AT5G57150 Arabidopsis thaliana AT5G57150 N 0.000
BGIOSGA007229 Oryza indica BGIOSGA007229 I 0.000
BGIOSGA040642 Oryza indica BGIOSGA040642 N 0.000
Bo1g014720 Brassica oleracea Bo1g014720 N 0.000
Bo3g019430 Brassica oleracea Bo3g019430 N 0.000
Bo7g114110 Brassica oleracea Bo7g114110 N 0.000
Bo9g130890 Brassica oleracea Bo9g130890 N 0.000
Bostr.26833s0543 Boechera stricta Bostr.26833s0543 N 0.000
Bostr.7867s0840 Boechera stricta Bostr.7867s0840 N 0.000
Bra006831 Brassica rapa Bra006831 N 0.000
Bra011152 Brassica rapa Bra011152 N 0.000
Bra020462 Brassica rapa Bra020462 N 0.000
Bra024115 Brassica rapa Bra024115 N 0.000
BRADI3G01901 Brachypodium distachyon BRADI3G01901 I 0.000
BRADI3G01910 Brachypodium distachyon BRADI3G01910 I 0.000
BRADI5G05110 Brachypodium distachyon BRADI5G05110 N 0.000
Cagra.0268s0010 Capsella grandiflora Cagra.0268s0010 N 0.000
Cagra.0568s0207 Capsella grandiflora Cagra.0568s0207 I 0.000
Cagra.1062s0003 Capsella grandiflora Cagra.1062s0003 I 0.000
Cagra.1569s0024 Capsella grandiflora Cagra.1569s0024 N 0.000
Carubv10006422m.g Capsella rubella Carubv10006422m.g N 0.000
Carubv10007380m.g Capsella rubella Carubv10007380m.g I 0.000
Carubv10009081m.g Capsella rubella Carubv10009081m.g I 0.000
cassava2997.m1 Manihot esculenta cassava2997.m1 I 0.000
Ciclev10009285m.g Citrus clementina Ciclev10009285m.g I 0.000
Cla010249 Citrullus lanatus Cla010249 N 0.000
Cla016068 Citrullus lanatus Cla016068 I 0.000
Cla019147 Citrullus lanatus Cla019147 N 0.000
Cla023112 Citrullus lanatus Cla023112 I 0.000
Cucsa.010660 Cucumis sativus Cucsa.010660 I 0.000
Cucsa.088960 Cucumis sativus Cucsa.088960 I 0.000
Cucsa.282100 Cucumis sativus Cucsa.282100 N 0.000
Cucsa.286080 Cucumis sativus Cucsa.286080 N 0.000
estExt_fgenesh1_pg.C_1590022 Physcomitrella patens estExt_fgenesh1_pg.C_1590022 I 0.000
Eucgr.C02208 Eucalyptus grandis Eucgr.C02208 I 0.000
evm.TU.supercontig_1024.1 Carica papaya evm.TU.supercontig_1024.1 I 0.000
evm.TU.supercontig_115.71 Carica papaya evm.TU.supercontig_115.71 N 0.000
e_gw1.25.105.1 Physcomitrella patens e_gw1.25.105.1 I 0.000
fgenesh2_kg.7__1196__AT4G29930.1 Arabidopsis lyrata fgenesh2_kg.7__1196__AT4G29930.1 N 0.000
fgenesh2_kg.8__1627__AT5G57150.1 Arabidopsis lyrata fgenesh2_kg.8__1627__AT5G57150.1 N 0.000
gene17273-v1.0-hybrid Fragaria vesca gene17273-v1.0-hybrid I 0.000
gene23715-v1.0-hybrid Fragaria vesca gene23715-v1.0-hybrid I 0.000
gene23716-v1.0-hybrid Fragaria vesca gene23716-v1.0-hybrid I 0.000
GLYMA05G38530 Glycine max GLYMA05G38530 I 0.000
GLYMA09G06770 Glycine max GLYMA09G06770 I 0.000
GLYMA13G00480 Glycine max GLYMA13G00480 I 0.000
GLYMA15G18070 Glycine max GLYMA15G18070 I 0.000
GLYMA16G26291 Glycine max GLYMA16G26291 I 0.000
GLYMA17G06610 Glycine max GLYMA17G06610 I 0.000
Gorai.009G002200 Gossypium raimondii Gorai.009G002200 I 0.000
Gorai.013G242800 Gossypium raimondii Gorai.013G242800 I 0.000
GRMZM2G042893 Zea mays GRMZM2G042893 N 0.000
GRMZM2G042895 Zea mays GRMZM2G042895 N 0.000
GRMZM2G119823 Zea mays GRMZM2G119823 I 0.000
GRMZM2G139372 Zea mays GRMZM2G139372 N 0.000
GSMUA_Achr10G23370_001 Musa acuminata GSMUA_Achr10G23370_001 I 0.000
GSMUA_Achr1G07330_001 Musa acuminata GSMUA_Achr1G07330_001 I 0.000
GSMUA_Achr1G07450_001 Musa acuminata GSMUA_Achr1G07450_001 I 0.000
GSMUA_Achr6G30900_001 Musa acuminata GSMUA_Achr6G30900_001 N 0.000
GSMUA_Achr7G16000_001 Musa acuminata GSMUA_Achr7G16000_001 I 0.000
gw1.257.54.1 Physcomitrella patens gw1.257.54.1 I 0.000
LPERR04G04520 Leersia perrieri LPERR04G04520 N 0.000
Lus10006951.g Linum usitatissimum Lus10006951.g I 0.000
Lus10030609.g Linum usitatissimum Lus10030609.g N 0.000
Lus10030880.g Linum usitatissimum Lus10030880.g N 0.000
MDP0000133262 Malus domestica MDP0000133262 I 0.000
MDP0000219146 Malus domestica MDP0000219146 I 0.000
MDP0000243628 Malus domestica MDP0000243628 I 0.000
MDP0000318229 Malus domestica MDP0000318229 I 0.000
mgf019723m Mimulus guttatus mgf019723m I 0.000
mgf024029m Mimulus guttatus mgf024029m I 0.000
MLOC_52192 Hordeum vulgare MLOC_52192 I 0.000
MLOC_62844 Hordeum vulgare MLOC_62844 N 0.000
MTR_2g038040 Medicago truncatula MTR_2g038040 I 0.000
OBART02G01550 Oryza barthii OBART02G01550 I 0.000
OGLUM02G01420 Oryza glumaepatula OGLUM02G01420 I 0.000
OMERI02G00890 Oryza meridionalis OMERI02G00890 I 0.000
OMERI03G04020 Oryza meridionalis OMERI03G04020 N 0.000
ONIVA01G07170 Oryza nivara ONIVA01G07170 N 0.000
ONIVA02G01430 Oryza nivara ONIVA02G01430 I 0.000
OPUNC02G01010 Oryza punctata OPUNC02G01010 I 0.000
OPUNC04G05630 Oryza punctata OPUNC04G05630 N 0.000
orange1.1g025665m.g Citrus sinensis orange1.1g025665m.g I 0.000
ORGLA02G0014200 Oryza glaberrima ORGLA02G0014200 I 0.000
ORUFI02G01530 Oryza rufipogon ORUFI02G01530 I 0.000
ORUFI04G07860 Oryza rufipogon ORUFI04G07860 N 0.000
TDR Oryza sativa OS02G0120500 I 0.000
OS04G0301500 Oryza sativa OS04G0301500 N 0.000
Pavir.Ab00204 Panicum virgatum Pavir.Ab00204 I 0.000
Pavir.Ga02255 Panicum virgatum Pavir.Ga02255 N 0.000
Pavir.Ga02256 Panicum virgatum Pavir.Ga02256 N 0.000
Pavir.Gb02205 Panicum virgatum Pavir.Gb02205 N 0.000
PDK_20s1347451g001 Phoenix dactylifera PDK_20s1347451g001 I 0.000
PGSC0003DMG400004087 Solanum tuberosum PGSC0003DMG400004087 I 0.000
PGSC0003DMG400014246 Solanum tuberosum PGSC0003DMG400014246 I 0.000
Pm020879 Prunus mume Pm020879 I 0.000
AMS Populus trichocarpa POPTR_0009s13860 I 0.000
POPTR_0018s13850 Populus trichocarpa POPTR_0018s13850 I 0.000
POPTR_0018s13860 Populus trichocarpa POPTR_0018s13860 I 0.000
PRUPE_ppa021593mg Prunus persica PRUPE_ppa021593mg N 0.000
PRUPE_ppa022211mg Prunus persica PRUPE_ppa022211mg I 0.000
SapurV1A.0140s0210 Salix purpurea SapurV1A.0140s0210 I 0.000
SapurV1A.0218s0460 Salix purpurea SapurV1A.0218s0460 I 0.000
Sb04g001650 Sorghum bicolor Sb04g001650 I 0.000
Sb07g004190 Sorghum bicolor Sb07g004190 N 0.000
SELMODRAFT_16038 Selaginella moellendorffii SELMODRAFT_16038 I 0.000
SELMODRAFT_16039 Selaginella moellendorffii SELMODRAFT_16039 I 0.000
SELMODRAFT_430203 Selaginella moellendorffii SELMODRAFT_430203 I 0.000
SELMODRAFT_451590 Selaginella moellendorffii SELMODRAFT_451590 I 0.000
Si006199m.g Setaria italica Si006199m.g I 0.000
Si006500m.g Setaria italica Si006500m.g I 0.000
Si010413m.g Setaria italica Si010413m.g N 0.000
Si010812m.g Setaria italica Si010812m.g N 0.000
Si019518m.g Setaria italica Si019518m.g I 0.000
Solyc07g018010.2 Solanum lycopersicum Solyc07g018010.2 I 0.000
TCM_039471 Theobroma cacao TCM_039471 I 0.000
Thhalv10014506m.g Eutrema salsugineum Thhalv10014506m.g N 0.000
Thhalv10027332m.g Eutrema salsugineum Thhalv10027332m.g N 0.000
Traes_2AL_411B944D6 Triticum aestivum Traes_2AL_411B944D6 N 0.000
Traes_2BL_8FED05903 Triticum aestivum Traes_2BL_8FED05903 N 0.000
Traes_2DL_DE3909A32 Triticum aestivum Traes_2DL_DE3909A32 N 0.000
Traes_6AS_4C2F64614 Triticum aestivum Traes_6AS_4C2F64614 I 0.000
Traes_6AS_66A98BA55 Triticum aestivum Traes_6AS_66A98BA55 I 0.000
VIT_11s0052g00100 Vitis vinifera VIT_11s0052g00100 I 0.000