Bra030996 (Brassica rapa)
CBF/NF-Y

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02045 (CBFB_NFYA) IPR001289 Bra030996 T159817_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030996.1-P CBF/NF-Y 107 162

Links

Other CBF/NF-Y family TFs
Other Brassica rapa TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NFYA8 Arabidopsis thaliana AT1G17590 N 0.911
Bo6g090310 Brassica oleracea Bo6g090310 N 0.911
Bra016031 Brassica rapa Bra016031 N 0.893
Bra008052 Brassica rapa Bra008052 N 0.893
Bo6g116250 Brassica oleracea Bo6g116250 N 0.893
Carubv10020596m.g Capsella rubella Carubv10020596m.g N 0.893
NF-YA8 Arabidopsis lyrata fgenesh2_kg.1__1922__AT1G17590.3 N 0.893
Bostr.10273s0069 Boechera stricta Bostr.10273s0069 N 0.893
Bo2g079060 Brassica oleracea Bo2g079060 N 0.893
Cagra.1013s0019 Capsella grandiflora Cagra.1013s0019 N 0.893
HAP2C Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001597 N 0.875
Thhalv10018869m.g Eutrema salsugineum Thhalv10018869m.g N 0.875
Bo6g116240 Brassica oleracea Bo6g116240 N 0.875
Bra003867 Brassica rapa Bra003867 N 0.857
Bo6g116210 Brassica oleracea Bo6g116210 N 0.857
HAP2C Arabidopsis thaliana AT1G72830 N 0.857
Bo8g104770 Brassica oleracea Bo8g104770 N 0.850
Carubv10009883m.g Capsella rubella Carubv10009883m.g N 0.786
Cagra.20869s0002 Capsella grandiflora Cagra.20869s0002 N 0.786
Bra037968 Brassica rapa Bra037968 N 0.786
Aquca_076_00118 Aquilegia coerulea Aquca_076_00118 N 0.786
Bra021527 Brassica rapa Bra021527 N 0.786
NFYA5 Arabidopsis thaliana AT1G54160 N 0.786
NFYA5 Arabidopsis lyrata Al_scaffold_0001_4860 N 0.786
NFYA6 Arabidopsis thaliana AT3G14020 N 0.786
Thhalv10011685m.g Eutrema salsugineum Thhalv10011685m.g N 0.786
Bo1g134650 Brassica oleracea Bo1g134650 N 0.786
Bo6g050970 Brassica oleracea Bo6g050970 N 0.786
Bostr.7128s0065 Boechera stricta Bostr.7128s0065 N 0.786
Ca_02713 Cicer arietinum Ca_02713 N 0.786
Ca_10039 Cicer arietinum Ca_10039 N 0.786
Bra014368 Brassica rapa Bra014368 N 0.786
29706.m001307 Ricinus communis 29706.m001307 N 0.768
Bostr.28625s0302 Boechera stricta Bostr.28625s0302 N 0.768
Carubv10014390m.g Capsella rubella Carubv10014390m.g N 0.768
MTR_2g099490 Medicago truncatula MTR_2g099490 N 0.768
fgenesh1_pg.C_scaffold_286000001 Arabidopsis lyrata fgenesh1_pg.C_scaffold_286000001 N 0.768
GLYMA07G04050 Glycine max GLYMA07G04050 I 0.768
Bra030899 Brassica rapa Bra030899 N 0.768
Thhalv10021250m.g Eutrema salsugineum Thhalv10021250m.g N 0.768
Al_scaffold_0003_1456 Arabidopsis lyrata Al_scaffold_0003_1456 N 0.768
Pm013295 Prunus mume Pm013295 N 0.750
OGLUM07G21630 Oryza glumaepatula OGLUM07G21630 I 0.750
OBART07G21740 Oryza barthii OBART07G21740 I 0.750
cassava2701.m1 Manihot esculenta cassava2701.m1 N 0.750
gene07522-v1.0-hybrid Fragaria vesca gene07522-v1.0-hybrid N 0.750
OB07G27370 Oryza brachyantha OB07G27370 I 0.750
OLONG_006035 Oryza longistaminata OLONG_006035 I 0.750
TRIUR3_22025 Triticum urartu TRIUR3_22025 I 0.750
OPUNC07G20270 Oryza punctata OPUNC07G20270 I 0.750
evm.TU.supercontig_25.96 Carica papaya evm.TU.supercontig_25.96 N 0.750
PRUPE_ppa020977mg Prunus persica PRUPE_ppa020977mg N 0.750
ONIVA06G16650 Oryza nivara ONIVA06G16650 I 0.750
Cagra.0736s0041 Capsella grandiflora Cagra.0736s0041 N 0.750
OMERI07G18140 Oryza meridionalis OMERI07G18140 I 0.750
MTR_8g019540 Medicago truncatula MTR_8g019540 I 0.750
Traes_2AS_7C177F9DB Triticum aestivum Traes_2AS_7C177F9DB I 0.750
GSMUA_AchrUn_randomG15140_001 Musa acuminata GSMUA_AchrUn_randomG15140_001 I 0.750
Traes_2BS_A95B28510 Triticum aestivum Traes_2BS_A95B28510 I 0.750
Traes_2DS_69FBC78BC Triticum aestivum Traes_2DS_69FBC78BC I 0.750
Bo3g184530 Brassica oleracea Bo3g184530 N 0.750
GLYMA16G00711 Glycine max GLYMA16G00711 I 0.750
F775_30001 Aegilops tauschii F775_30001 I 0.750
TCM_029103 Theobroma cacao TCM_029103 N 0.750
ORUFI07G22690 Oryza rufipogon ORUFI07G22690 I 0.750
cassava38312.valid.m1 Manihot esculenta cassava38312.valid.m1 N 0.750
MLOC_67781 Hordeum vulgare MLOC_67781 I 0.750
BGIOSGA023919 Oryza indica BGIOSGA023919 I 0.750
OS07G0608200 Oryza sativa OS07G0608200 I 0.750
ORGLA07G0166900 Oryza glaberrima ORGLA07G0166900 I 0.750
Sb04g034760 Sorghum bicolor Sb04g034760 I 0.732
chr3.CM0724.30.nd Lotus japonicus chr3.CM0724.30.nd I 0.732
Cagra.1508s0155 Capsella grandiflora Cagra.1508s0155 N 0.732
Carubv10010359m.g Capsella rubella Carubv10010359m.g N 0.732
BRADI3G57320 Brachypodium distachyon BRADI3G57320 N 0.732
Si036728m.g Setaria italica Si036728m.g I 0.732
Si030663m.g Setaria italica Si030663m.g I 0.732
Gorai.011G057600 Gossypium raimondii Gorai.011G057600 N 0.732
GSMUA_Achr8G30700_001 Musa acuminata GSMUA_Achr8G30700_001 I 0.732
Pavir.Aa00318 Panicum virgatum Pavir.Aa00318 I 0.732
LPERR03G18110 Leersia perrieri LPERR03G18110 I 0.732
Pavir.Ba00442 Panicum virgatum Pavir.Ba00442 I 0.732
Pavir.Ib01915 Panicum virgatum Pavir.Ib01915 I 0.732
Pavir.J05826 Panicum virgatum Pavir.J05826 I 0.732
Pavir.J00945 Panicum virgatum Pavir.J00945 I 0.732
LPERR07G18840 Leersia perrieri LPERR07G18840 I 0.732
MDP0000434309 Malus domestica MDP0000434309 N 0.732
LjT30L14.130.nd Lotus japonicus LjT30L14.130.nd N 0.732
OPUNC03G19990 Oryza punctata OPUNC03G19990 I 0.732
Bostr.15697s0348 Boechera stricta Bostr.15697s0348 N 0.732
OB03G30290 Oryza brachyantha OB03G30290 I 0.732
AMTR_s00048p00192930 Amborella trichopoda AMTR_s00048p00192930 I 0.732
PDK_20s1300541g001 Phoenix dactylifera PDK_20s1300541g001 I 0.732
MDP0000183865 Malus domestica MDP0000183865 I 0.727
PDK_20s1462571g003 Phoenix dactylifera PDK_20s1462571g003 N 0.714
Gorai.009G143800 Gossypium raimondii Gorai.009G143800 N 0.714
Lus10038448.g Linum usitatissimum Lus10038448.g N 0.714
Lus10023358.g Linum usitatissimum Lus10023358.g N 0.714
Pavir.J06649 Panicum virgatum Pavir.J06649 N 0.714
SapurV1A.0563s0020 Salix purpurea SapurV1A.0563s0020 N 0.714
Thhalv10009032m.g Eutrema salsugineum Thhalv10009032m.g N 0.714
Gorai.013G226200 Gossypium raimondii Gorai.013G226200 I 0.714
Gorai.012G010900 Gossypium raimondii Gorai.012G010900 N 0.714
evm.TU.supercontig_20.45 Carica papaya evm.TU.supercontig_20.45 N 0.714
gene12709-v1.0-hybrid Fragaria vesca gene12709-v1.0-hybrid N 0.714
Gorai.009G115000 Gossypium raimondii Gorai.009G115000 N 0.714
Gorai.011G004400 Gossypium raimondii Gorai.011G004400 N 0.714
Eucgr.F03169 Eucalyptus grandis Eucgr.F03169 I 0.714
PGSC0003DMG400010697 Solanum tuberosum PGSC0003DMG400010697 N 0.714
LPERR02G28390 Leersia perrieri LPERR02G28390 I 0.714
GSMUA_Achr2G21730_001 Musa acuminata GSMUA_Achr2G21730_001 N 0.714
GRMZM5G857944 Zea mays GRMZM5G857944 N 0.714
GRMZM2G040349 Zea mays GRMZM2G040349 I 0.714
MLOC_36554 Hordeum vulgare MLOC_36554 N 0.714
MTR_2g041090 Medicago truncatula MTR_2g041090 N 0.714
OGLUM03G21930 Oryza glumaepatula OGLUM03G21930 I 0.714
OBART03G21180 Oryza barthii OBART03G21180 I 0.714
OB02G41320 Oryza brachyantha OB02G41320 I 0.714
GRMZM2G038303 Zea mays GRMZM2G038303 I 0.714
GLYMA17G05920 Glycine max GLYMA17G05920 I 0.714
Bra032395 Brassica rapa Bra032395 N 0.714
Bo5g063060 Brassica oleracea Bo5g063060 N 0.714
BGIOSGA012852 Oryza indica BGIOSGA012852 N 0.714
NFYA7 Arabidopsis thaliana AT1G30500 N 0.714
F775_25120 Aegilops tauschii F775_25120 N 0.714
NF-YA7 Arabidopsis lyrata fgenesh2_kg.1__3232__AT1G30500.2 N 0.714
GLYMA15G18970 Glycine max GLYMA15G18970 I 0.714
GLYMA15G03175 Glycine max GLYMA15G03175 N 0.714
GLYMA09G07960 Glycine max GLYMA09G07960 I 0.714
OLONG_006679 Oryza longistaminata OLONG_006679 I 0.714
ONIVA03G10270 Oryza nivara ONIVA03G10270 I 0.714
Traes_6DL_29F162FB2 Triticum aestivum Traes_6DL_29F162FB2 N 0.714
Traes_6BL_953171851 Triticum aestivum Traes_6BL_953171851 N 0.714
Traes_6AL_C0E74F959 Triticum aestivum Traes_6AL_C0E74F959 N 0.714
TCM_037576 Theobroma cacao TCM_037576 N 0.714
TRIUR3_28928 Triticum urartu TRIUR3_28928 N 0.714
VIT_11s0016g01480 Vitis vinifera VIT_11s0016g01480 N 0.714
mgf004929m Mimulus guttatus mgf004929m N 0.714
Pm027028 Prunus mume Pm027028 N 0.714
Ca_11593 Cicer arietinum Ca_11593 N 0.714
Solyc02g069860.2 Solanum lycopersicum Solyc02g069860.2 N 0.714
Solyc01g008490.2 Solanum lycopersicum Solyc01g008490.2 N 0.714
PGSC0003DMG400011806 Solanum tuberosum PGSC0003DMG400011806 N 0.714
OS03G0411100 Oryza sativa OS03G0411100 N 0.714
ORUFI03G21850 Oryza rufipogon ORUFI03G21850 I 0.714
ORGLA03G0197400 Oryza glaberrima ORGLA03G0197400 I 0.714
POPTR_0011s10080 Populus trichocarpa POPTR_0011s10080 N 0.714
PRUPE_ppa016008mg Prunus persica PRUPE_ppa016008mg N 0.714
Si019645m.g Setaria italica Si019645m.g N 0.714
Sb02g038960 Sorghum bicolor Sb02g038960 I 0.714
Sb01g032710 Sorghum bicolor Sb01g032710 I 0.714
Aquca_020_00519 Aquilegia coerulea Aquca_020_00519 N 0.714