CGI_10002627 (Crassostrea gigas)
CBF/NF-Y

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02045 (CBFB_NFYA) IPR001289 CGI_10002627 T159854_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NFYA
M08104_2.00
Homo sapiens
NSTGATTGGYB

VRCCAATCASN
ChIP-seq
Mathelier et al.(2014)
MA0060.3
0.839 0.839
NFYA
M09018_2.00
Homo sapiens
YKBYSATTGGYYRV

BYRRCCAATSRVMR
Misc
Kulakovskiy et al.(2013)
NFYA_HUMAN.H11MO.0.A
0.839 0.839
Nfya
M09019_2.00
Mus musculus
YKBYSATTGGYYRV

BYRRCCAATSRVMR
Misc
Kulakovskiy et al.(2013)
NFYA_MOUSE.H11MO.0.A
0.839 0.839
NFYA
M10403_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFYA_02
0.839 0.839
NFYA
M10404_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFYA_Q5
0.839 0.839
NFYA
M10405_2.00
Homo sapiens
NYTGATTGGYTAVH

DBTARCCAATCARN
Transfac
Matys et al.(2006)
V$NFY_C
0.839 0.839
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC37366 CBF/NF-Y 692 747

Links

Other CBF/NF-Y family TFs
Other Crassostrea gigas TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_14336 Aegilops tauschii F775_14336 N 0.000
AMTR_s00077p00190160 Amborella trichopoda AMTR_s00077p00190160 N 0.000
Aquca_004_00566 Aquilegia coerulea Aquca_004_00566 N 0.000
SCR Arabidopsis lyrata fgenesh2_kg.5__1811__AT3G54220.1 N 0.000
SCR Arabidopsis thaliana AT3G54220 N 0.000
Bostr.0697s0034 Boechera stricta Bostr.0697s0034 N 0.000
BRADI4G44090 Brachypodium distachyon BRADI4G44090 N 0.000
Bo8g083500 Brassica oleracea Bo8g083500 N 0.000
Bra007056 Brassica rapa Bra007056 N 0.000
PK22310.1 Cannabis sativa PK22310.1 N 0.000
Cagra.0562s0013 Capsella grandiflora Cagra.0562s0013 N 0.000
Carubv10016802m.g Capsella rubella Carubv10016802m.g N 0.000
evm.TU.supercontig_1018.1 Carica papaya evm.TU.supercontig_1018.1 N 0.000
evm.TU.supercontig_8.295 Carica papaya evm.TU.supercontig_8.295 N 0.000
Ca_11130 Cicer arietinum Ca_11130 N 0.000
Ca_09530 Cicer arietinum Ca_09530 N 0.000
Cla012346 Citrullus lanatus Cla012346 N 0.000
Ciclev10011085m.g Citrus clementina Ciclev10011085m.g N 0.000
Ciclev10011732m.g Citrus clementina Ciclev10011732m.g N 0.000
orange1.1g014896m.g Citrus sinensis orange1.1g014896m.g N 0.000
orange1.1g013903m.g Citrus sinensis orange1.1g013903m.g N 0.000
Cucsa.002880 Cucumis sativus Cucsa.002880 N 0.000
Cucsa.180010 Cucumis sativus Cucsa.180010 N 0.000
Eucgr.K01320 Eucalyptus grandis Eucgr.K01320 N 0.000
Eucgr.A00903 Eucalyptus grandis Eucgr.A00903 N 0.000
Thhalv10010179m.g Eutrema salsugineum Thhalv10010179m.g N 0.000
gene13644-v1.0-hybrid Fragaria vesca gene13644-v1.0-hybrid N 0.000
GLYMA11G10220 Glycine max GLYMA11G10220 N 0.000
GLYMA18G45220 Glycine max GLYMA18G45220 N 0.000
GLYMA09G40620 Glycine max GLYMA09G40620 N 0.000
Gorai.005G001300 Gossypium raimondii Gorai.005G001300 N 0.000
Gorai.006G236200 Gossypium raimondii Gorai.006G236200 N 0.000
MLOC_79758 Hordeum vulgare MLOC_79758 N 0.000
MLOC_64716 Hordeum vulgare MLOC_64716 N 0.000
LPERR12G01340 Leersia perrieri LPERR12G01340 N 0.000
LPERR11G01220 Leersia perrieri LPERR11G01220 N 0.000
Lus10016496.g Linum usitatissimum Lus10016496.g N 0.000
Lus10040734.g Linum usitatissimum Lus10040734.g N 0.000
chr1.CM1255.400.nc Lotus japonicus chr1.CM1255.400.nc N 0.000
chr3.CM0460.360.nd Lotus japonicus chr3.CM0460.360.nd N 0.000
MDP0000287321 Malus domestica MDP0000287321 N 0.000
MDP0000397638 Malus domestica MDP0000397638 N 0.000
MDP0000269044 Malus domestica MDP0000269044 N 0.000
MDP0000289554 Malus domestica MDP0000289554 N 0.000
cassava25218.valid.m1 Manihot esculenta cassava25218.valid.m1 N 0.000
cassava36326.valid.m1 Manihot esculenta cassava36326.valid.m1 N 0.000
cassava29451.valid.m1 Manihot esculenta cassava29451.valid.m1 N 0.000
MTR_4g076020 Medicago truncatula MTR_4g076020 N 0.000
MTR_7g074650 Medicago truncatula MTR_7g074650 N 0.000
mgf012242m Mimulus guttatus mgf012242m N 0.000
GSMUA_Achr8G09400_001 Musa acuminata GSMUA_Achr8G09400_001 N 0.000
OBART11G01460 Oryza barthii OBART11G01460 N 0.000
OBART12G01190 Oryza barthii OBART12G01190 N 0.000
OB12G11340 Oryza brachyantha OB12G11340 N 0.000
OB11G11140 Oryza brachyantha OB11G11140 N 0.000
OB07G24850 Oryza brachyantha OB07G24850 N 0.000
ORGLA11G0013300 Oryza glaberrima ORGLA11G0013300 N 0.000
ORGLA12G0010300 Oryza glaberrima ORGLA12G0010300 N 0.000
OGLUM11G01180 Oryza glumaepatula OGLUM11G01180 N 0.000
OGLUM12G01020 Oryza glumaepatula OGLUM12G01020 N 0.000
BGIOSGA036912 Oryza indica BGIOSGA036912 N 0.000
BGIOSGA034703 Oryza indica BGIOSGA034703 N 0.000
OLONG_010321 Oryza longistaminata OLONG_010321 N 0.000
OMERI06G09050 Oryza meridionalis OMERI06G09050 N 0.000
ONIVA11G01600 Oryza nivara ONIVA11G01600 N 0.000
OPUNC11G01240 Oryza punctata OPUNC11G01240 N 0.000
ORUFI12G01460 Oryza rufipogon ORUFI12G01460 N 0.000
ORUFI11G01380 Oryza rufipogon ORUFI11G01380 N 0.000
SCR2 Oryza sativa OS12G0122000 N 0.000
SCR1 Oryza sativa OS11G0124300 N 0.000
OS07G0567700 Oryza sativa OS07G0567700 N 0.000
Pavir.Ha01915 Panicum virgatum Pavir.Ha01915 N 0.000
Pavir.J23622 Panicum virgatum Pavir.J23622 N 0.000
Pavir.J19041 Panicum virgatum Pavir.J19041 N 0.000
Pavir.J21588 Panicum virgatum Pavir.J21588 N 0.000
Pavir.J08573 Panicum virgatum Pavir.J08573 N 0.000
POPTR_0006s02220 Populus trichocarpa POPTR_0006s02220 N 0.000
POPTR_0016s02030 Populus trichocarpa POPTR_0016s02030 N 0.000
POPTR_0006s11500 Populus trichocarpa POPTR_0006s11500 N 0.000
POPTR_0016s15060 Populus trichocarpa POPTR_0016s15060 N 0.000
Pm002956 Prunus mume Pm002956 N 0.000
Pm014866 Prunus mume Pm014866 N 0.000
PRUPE_ppa005742mg Prunus persica PRUPE_ppa005742mg N 0.000
PRUPE_ppa001546mg Prunus persica PRUPE_ppa001546mg N 0.000
30073.m002204 Ricinus communis 30073.m002204 N 0.000
SapurV1A.0295s0450 Salix purpurea SapurV1A.0295s0450 N 0.000
SapurV1A.1165s0100 Salix purpurea SapurV1A.1165s0100 N 0.000
SapurV1A.0208s0090 Salix purpurea SapurV1A.0208s0090 N 0.000
SELMODRAFT_432115 Selaginella moellendorffii SELMODRAFT_432115 N 0.000
Solyc10g074680.1 Solanum lycopersicum Solyc10g074680.1 N 0.000
PGSC0003DMG400016833 Solanum tuberosum PGSC0003DMG400016833 N 0.000
Sb05g001500 Sorghum bicolor Sb05g001500 N 0.000
TCM_017746 Theobroma cacao TCM_017746 N 0.000
Traes_4DS_2CE9E3235 Triticum aestivum Traes_4DS_2CE9E3235 N 0.000
Traes_5BL_C02570726 Triticum aestivum Traes_5BL_C02570726 N 0.000
Traes_4BS_A05D3DC53 Triticum aestivum Traes_4BS_A05D3DC53 N 0.000
Traes_5DL_3EC609F62 Triticum aestivum Traes_5DL_3EC609F62 N 0.000
TRIUR3_28106 Triticum urartu TRIUR3_28106 N 0.000
VIT_03s0017g01660 Vitis vinifera VIT_03s0017g01660 N 0.000
SCR Vitis vinifera VIT_08s0056g00050 N 0.000
GRMZM2G131516 Zea mays GRMZM2G131516 N 0.000
GRMZM2G015080 Zea mays GRMZM2G015080 N 0.000