gene18295-v1.0-hybrid (Fragaria vesca)
CBF/NF-Y

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02045 (CBFB_NFYA) IPR001289 gene18295-v1.0-hybrid T160674_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna18295.1-v1.0-hybrid CBF/NF-Y 149 204

Links

Other CBF/NF-Y family TFs
Other Fragaria vesca TFs

260 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OPUNC03G27900 Oryza punctata OPUNC03G27900 I 0.714
evm.TU.supercontig_125.6 Carica papaya evm.TU.supercontig_125.6 I 0.750
LPERR03G25340 Leersia perrieri LPERR03G25340 I 0.714
Cucsa.374630 Cucumis sativus Cucsa.374630 I 0.768
POPTR_0016s05440 Populus trichocarpa POPTR_0016s05440 I 0.750
MDP0000183865 Malus domestica MDP0000183865 I 0.864
Cucsa.127910 Cucumis sativus Cucsa.127910 I 0.732
GSMUA_Achr4G11090_001 Musa acuminata GSMUA_Achr4G11090_001 I 0.750
ORGLA03G0280400 Oryza glaberrima ORGLA03G0280400 I 0.714
cassava36568.valid.m1 Manihot esculenta cassava36568.valid.m1 I 0.714
Sb01g011220 Sorghum bicolor Sb01g011220 I 0.714
GRMZM2G091964 Zea mays GRMZM2G091964 I 0.714
cassava29667.valid.m1 Manihot esculenta cassava29667.valid.m1 I 0.714
GLYMA13G27230 Glycine max GLYMA13G27230 I 0.732
GLYMA12G36540 Glycine max GLYMA12G36540 I 0.732
POPTR_0006s05210 Populus trichocarpa POPTR_0006s05210 I 0.750
Lus10012202.g Linum usitatissimum Lus10012202.g I 0.750
Ciclev10005144m.g Citrus clementina Ciclev10005144m.g I 0.732
ONIVA03G31950 Oryza nivara ONIVA03G31950 I 0.714
ORUFI03G31840 Oryza rufipogon ORUFI03G31840 I 0.714
OMERI03G26770 Oryza meridionalis OMERI03G26770 I 0.714
OS03G0696300 Oryza sativa OS03G0696300 I 0.714
Gorai.002G151800 Gossypium raimondii Gorai.002G151800 I 0.750
OGLUM03G30810 Oryza glumaepatula OGLUM03G30810 I 0.714
PGSC0003DMG400006863 Solanum tuberosum PGSC0003DMG400006863 I 0.714
Gorai.003G093300 Gossypium raimondii Gorai.003G093300 I 0.750
Gorai.004G066000 Gossypium raimondii Gorai.004G066000 I 0.714
OBART03G30600 Oryza barthii OBART03G30600 I 0.714
Gorai.004G172100 Gossypium raimondii Gorai.004G172100 I 0.750
OB03G37700 Oryza brachyantha OB03G37700 I 0.714
Lus10011326.g Linum usitatissimum Lus10011326.g I 0.750
cassava38260.valid.m1 Manihot esculenta cassava38260.valid.m1 I 0.750
BRADI1G11800 Brachypodium distachyon BRADI1G11800 I 0.732
BGIOSGA013378 Oryza indica BGIOSGA013378 I 0.714
SapurV1A.0133s0410 Salix purpurea SapurV1A.0133s0410 I 0.750
Traes_4AL_7C4C68FD0 Triticum aestivum Traes_4AL_7C4C68FD0 I 0.732
Solyc01g087240.2 Solanum lycopersicum Solyc01g087240.2 I 0.714
PK11147.1 Cannabis sativa PK11147.1 I 0.750
Traes_4BS_B7B7EFF37 Triticum aestivum Traes_4BS_B7B7EFF37 I 0.732
Traes_4DS_AFBE29C20 Triticum aestivum Traes_4DS_AFBE29C20 I 0.732
VIT_13s0064g00860 Vitis vinifera VIT_13s0064g00860 I 0.750
TRIUR3_09920 Triticum urartu TRIUR3_09920 I 0.732
PK21261.1 Cannabis sativa PK21261.1 I 0.732
VIT_08s0007g08250 Vitis vinifera VIT_08s0007g08250 I 0.732
Cla015490 Citrullus lanatus Cla015490 I 0.732
TCM_024732 Theobroma cacao TCM_024732 I 0.750
orange1.1g017825m.g Citrus sinensis orange1.1g017825m.g I 0.732
Pavir.J08102 Panicum virgatum Pavir.J08102 I 0.714
TCM_005875 Theobroma cacao TCM_005875 I 0.750
Pavir.Ia00780 Panicum virgatum Pavir.Ia00780 I 0.714
AMTR_s00103p00144230 Amborella trichopoda AMTR_s00103p00144230 I 0.732
Si037045m.g Setaria italica Si037045m.g I 0.714
Bostr.2570s0105 Boechera stricta Bostr.2570s0105 N 0.732
Carubv10001713m.g Capsella rubella Carubv10001713m.g N 0.811
Aquca_009_00676 Aquilegia coerulea Aquca_009_00676 N 0.768
Aquca_026_00359 Aquilegia coerulea Aquca_026_00359 N 0.750
Bostr.13129s0320 Boechera stricta Bostr.13129s0320 N 0.811
Cla009990 Citrullus lanatus Cla009990 N 0.750
Bostr.15697s0348 Boechera stricta Bostr.15697s0348 N 0.714
Cagra.1508s0155 Capsella grandiflora Cagra.1508s0155 N 0.714
Ca_20250 Cicer arietinum Ca_20250 N 0.732
Cagra.3346s0024 Capsella grandiflora Cagra.3346s0024 N 0.732
Cagra.2117s0012 Capsella grandiflora Cagra.2117s0012 N 0.811
Cagra.2108s0005 Capsella grandiflora Cagra.2108s0005 N 0.750
cassava24161.valid.m1 Manihot esculenta cassava24161.valid.m1 N 0.714
Cla000845 Citrullus lanatus Cla000845 N 0.786
Bostr.23794s0634 Boechera stricta Bostr.23794s0634 N 0.750
estExt_fgenesh1_pg.C_420118 Physcomitrella patens estExt_fgenesh1_pg.C_420118 N 0.714
cassava41983.valid.m1 Manihot esculenta cassava41983.valid.m1 N 0.732
29912.m005288 Ricinus communis 29912.m005288 N 0.714
Pm027028 Prunus mume Pm027028 N 0.714
cassava31874.valid.m1 Manihot esculenta cassava31874.valid.m1 N 0.732
cassava31873.valid.m1 Manihot esculenta cassava31873.valid.m1 N 0.732
SapurV1A.0563s0020 Salix purpurea SapurV1A.0563s0020 N 0.714
29333.m001059 Ricinus communis 29333.m001059 N 0.804
cassava24247.valid.m1 Manihot esculenta cassava24247.valid.m1 N 0.732
Cucsa.048230 Cucumis sativus Cucsa.048230 N 0.750
Cucsa.241980 Cucumis sativus Cucsa.241980 N 0.875
Cla017115 Citrullus lanatus Cla017115 N 0.732
mgf025421m Mimulus guttatus mgf025421m N 0.750
Cla017884 Citrullus lanatus Cla017884 N 0.875
mgf016940m Mimulus guttatus mgf016940m N 0.714
mg014677m Mimulus guttatus mg014677m N 0.750
Pm010516 Prunus mume Pm010516 N 0.732
Pm016266 Prunus mume Pm016266 N 0.714
Pm026038 Prunus mume Pm026038 N 0.964
29864.m001503 Ricinus communis 29864.m001503 N 0.714
Carubv10010359m.g Capsella rubella Carubv10010359m.g N 0.714
PDK_20s1414021g001 Phoenix dactylifera PDK_20s1414021g001 N 0.714
SapurV1A.0083s0230 Salix purpurea SapurV1A.0083s0230 N 0.714
SapurV1A.0027s0420 Salix purpurea SapurV1A.0027s0420 N 0.714
Pavir.J24924 Panicum virgatum Pavir.J24924 N 0.732
Pavir.Ib04124 Panicum virgatum Pavir.Ib04124 N 0.750
Pavir.Ia01146 Panicum virgatum Pavir.Ia01146 N 0.750
Pavir.Cb00052 Panicum virgatum Pavir.Cb00052 N 0.732
orange1.1g026474m.g Citrus sinensis orange1.1g026474m.g N 0.732
orange1.1g021081m.g Citrus sinensis orange1.1g021081m.g N 0.857
orange1.1g019764m.g Citrus sinensis orange1.1g019764m.g N 0.750
PDK_20s1462571g003 Phoenix dactylifera PDK_20s1462571g003 N 0.714
MDP0000948645 Malus domestica MDP0000948645 N 0.946
MDP0000827821 Malus domestica MDP0000827821 N 0.732
SapurV1A.0111s0280 Salix purpurea SapurV1A.0111s0280 N 0.714
SapurV1A.0258s0010 Salix purpurea SapurV1A.0258s0010 N 0.786
chr5.CM0571.20.nd Lotus japonicus chr5.CM0571.20.nd N 0.857
chr1.CM0361.430.nc Lotus japonicus chr1.CM0361.430.nc N 0.804
PK26326.1 Cannabis sativa PK26326.1 N 0.821
PK20005.1 Cannabis sativa PK20005.1 N 0.732
PK00926.1 Cannabis sativa PK00926.1 N 0.732
Thhalv10021244m.g Eutrema salsugineum Thhalv10021244m.g N 0.768
Thhalv10017261m.g Eutrema salsugineum Thhalv10017261m.g N 0.750
Thhalv10014346m.g Eutrema salsugineum Thhalv10014346m.g N 0.804
Thhalv10009032m.g Eutrema salsugineum Thhalv10009032m.g N 0.714
SapurV1A.2739s0010 Salix purpurea SapurV1A.2739s0010 N 0.714
SapurV1A.1209s0040 Salix purpurea SapurV1A.1209s0040 N 0.821
SapurV1A.0980s0030 Salix purpurea SapurV1A.0980s0030 N 0.786
MDP0000785523 Malus domestica MDP0000785523 N 0.929
MDP0000682805 Malus domestica MDP0000682805 N 0.732
MDP0000588222 Malus domestica MDP0000588222 N 0.929
gene26819-v1.0-hybrid Fragaria vesca gene26819-v1.0-hybrid N 0.714
evm.TU.supercontig_20.45 Carica papaya evm.TU.supercontig_20.45 N 0.750
Lus10021259.g Linum usitatissimum Lus10021259.g N 0.804
evm.TU.supercontig_104.9 Carica papaya evm.TU.supercontig_104.9 N 0.893
Eucgr.K01943 Eucalyptus grandis Eucgr.K01943 N 0.750
Eucgr.C00842 Eucalyptus grandis Eucgr.C00842 N 0.714
Eucgr.A02570 Eucalyptus grandis Eucgr.A02570 N 0.804
Eucgr.A02381 Eucalyptus grandis Eucgr.A02381 N 0.750
Ciclev10032207m.g Citrus clementina Ciclev10032207m.g N 0.750
Ciclev10016491m.g Citrus clementina Ciclev10016491m.g N 0.732
Ciclev10012232m.g Citrus clementina Ciclev10012232m.g N 0.857
Carubv10024092m.g Capsella rubella Carubv10024092m.g N 0.732
gene28941-v1.0-hybrid Fragaria vesca gene28941-v1.0-hybrid N 0.750
Gorai.002G234400 Gossypium raimondii Gorai.002G234400 N 0.839
MDP0000506954 Malus domestica MDP0000506954 N 0.714
MDP0000375005 Malus domestica MDP0000375005 N 0.946
MDP0000279028 Malus domestica MDP0000279028 N 0.732
MDP0000278621 Malus domestica MDP0000278621 N 0.732
MDP0000223651 Malus domestica MDP0000223651 N 0.714
MDP0000129029 Malus domestica MDP0000129029 N 0.929
Lus10038448.g Linum usitatissimum Lus10038448.g N 0.714
Lus10023358.g Linum usitatissimum Lus10023358.g N 0.714
Lus10013592.g Linum usitatissimum Lus10013592.g N 0.804
Gorai.011G004400 Gossypium raimondii Gorai.011G004400 N 0.732
Gorai.009G115000 Gossypium raimondii Gorai.009G115000 N 0.732
Gorai.007G363800 Gossypium raimondii Gorai.007G363800 N 0.821
Carubv10014086m.g Capsella rubella Carubv10014086m.g N 0.750
Ca_14455 Cicer arietinum Ca_14455 N 0.821
OGLUM03G28230 Oryza glumaepatula OGLUM03G28230 N 0.732
GSMUA_Achr7G01070_001 Musa acuminata GSMUA_Achr7G01070_001 N 0.786
GSMUA_Achr4G31650_001 Musa acuminata GSMUA_Achr4G31650_001 N 0.750
GSMUA_Achr4G31420_001 Musa acuminata GSMUA_Achr4G31420_001 N 0.732
GSMUA_Achr4G28390_001 Musa acuminata GSMUA_Achr4G28390_001 N 0.714
GSMUA_Achr4G03600_001 Musa acuminata GSMUA_Achr4G03600_001 N 0.732
GSMUA_Achr3G29730_001 Musa acuminata GSMUA_Achr3G29730_001 N 0.750
GSMUA_Achr2G12930_001 Musa acuminata GSMUA_Achr2G12930_001 N 0.714
GRMZM5G829103 Zea mays GRMZM5G829103 N 0.750
GRMZM2G165488 Zea mays GRMZM2G165488 N 0.714
GLYMA19G38800 Glycine max GLYMA19G38800 N 0.804
GLYMA15G13660 Glycine max GLYMA15G13660 N 0.768
GLYMA10G10240 Glycine max GLYMA10G10240 N 0.821
GSMUA_Achr7G07860_001 Musa acuminata GSMUA_Achr7G07860_001 N 0.732
GSMUA_Achr9G10300_001 Musa acuminata GSMUA_Achr9G10300_001 N 0.714
OBART12G19060 Oryza barthii OBART12G19060 N 0.750
OBART08G05580 Oryza barthii OBART08G05580 N 0.732
OB12G25960 Oryza brachyantha OB12G25960 N 0.750
OB08G15650 Oryza brachyantha OB08G15650 N 0.714
OB03G35340 Oryza brachyantha OB03G35340 N 0.732
MTR_7g106450 Medicago truncatula MTR_7g106450 N 0.821
MTR_2g030170 Medicago truncatula MTR_2g030170 N 0.714
MTR_1g056530 Medicago truncatula MTR_1g056530 N 0.804
MLOC_76757 Hordeum vulgare MLOC_76757 N 0.732
LPERR12G16030 Leersia perrieri LPERR12G16030 N 0.750
LPERR08G05240 Leersia perrieri LPERR08G05240 N 0.732
LPERR03G22840 Leersia perrieri LPERR03G22840 N 0.732
GLYMA09G02770 Glycine max GLYMA09G02770 N 0.768
GLYMA08G13090 Glycine max GLYMA08G13090 N 0.750
GLYMA05G29970 Glycine max GLYMA05G29970 N 0.714
Bo4g039370 Brassica oleracea Bo4g039370 N 0.732
Bo3g060160 Brassica oleracea Bo3g060160 N 0.750
Bo1g150420 Brassica oleracea Bo1g150420 N 0.732
BGIOSGA035818 Oryza indica BGIOSGA035818 N 0.732
BGIOSGA028138 Oryza indica BGIOSGA028138 N 0.732
BGIOSGA024793 Oryza indica BGIOSGA024793 N 0.750
BGIOSGA010142 Oryza indica BGIOSGA010142 N 0.732
NFYA10 Arabidopsis thaliana AT5G06510 N 0.811
UNE8 Arabidopsis thaliana AT3G05690 N 0.732
NFYA4 Arabidopsis thaliana AT2G34720 N 0.750
AMTR_s00155p00071520 Amborella trichopoda AMTR_s00155p00071520 N 0.750
AMTR_s00004p00174960 Amborella trichopoda AMTR_s00004p00174960 N 0.786
Bo5g063060 Brassica oleracea Bo5g063060 N 0.714
Bo5g145140 Brassica oleracea Bo5g145140 N 0.768
GLYMA03G36140 Glycine max GLYMA03G36140 N 0.821
GLYMA02G35190 Glycine max GLYMA02G35190 N 0.839
fgenesh2_kg.4__1496__AT2G34720.1 Arabidopsis lyrata fgenesh2_kg.4__1496__AT2G34720.1 N 0.750
UNE8 Arabidopsis lyrata fgenesh2_kg.3__563__AT3G05690.1 N 0.732
F775_09086 Aegilops tauschii F775_09086 N 0.750
BRADI4G01380 Brachypodium distachyon BRADI4G01380 N 0.732
Bra040529 Brassica rapa Bra040529 N 0.732
Bra032395 Brassica rapa Bra032395 N 0.714
Bra009200 Brassica rapa Bra009200 N 0.732
Bra005397 Brassica rapa Bra005397 N 0.732
Bra001164 Brassica rapa Bra001164 N 0.732
Bo9g176100 Brassica oleracea Bo9g176100 N 0.750
Al_scaffold_0481_2 Arabidopsis lyrata Al_scaffold_0481_2 N 0.750
Ca_07995 Cicer arietinum Ca_07995 N 0.732
NF-YA10 Arabidopsis lyrata scaffold_600636.1 N 0.811
Sb08g021910 Sorghum bicolor Sb08g021910 N 0.714
Sb01g013430 Sorghum bicolor Sb01g013430 N 0.750
PRUPE_ppa017366mg Prunus persica PRUPE_ppa017366mg N 0.964
PRUPE_ppa016008mg Prunus persica PRUPE_ppa016008mg N 0.714
PRUPE_ppa012173mg Prunus persica PRUPE_ppa012173mg N 0.714
PRUPE_ppa011627mg Prunus persica PRUPE_ppa011627mg N 0.732
POPTR_0018s07220 Populus trichocarpa POPTR_0018s07220 N 0.732
POPTR_0016s06860 Populus trichocarpa POPTR_0016s06860 N 0.821
POPTR_0011s10080 Populus trichocarpa POPTR_0011s10080 N 0.714
POPTR_0006s21640 Populus trichocarpa POPTR_0006s21640 N 0.821
POPTR_0001s27300 Populus trichocarpa POPTR_0001s27300 N 0.714
SELMODRAFT_38090 Selaginella moellendorffii SELMODRAFT_38090 N 0.768
SELMODRAFT_438143 Selaginella moellendorffii SELMODRAFT_438143 N 0.768
Ca_00866 Cicer arietinum Ca_00866 N 0.839
VIT_10s0003g04650 Vitis vinifera VIT_10s0003g04650 N 0.732
VIT_08s0032g01190 Vitis vinifera VIT_08s0032g01190 N 0.875
TRIUR3_28596 Triticum urartu TRIUR3_28596 N 0.750
Traes_5DS_443F1993A Triticum aestivum Traes_5DS_443F1993A N 0.750
Traes_5BS_F1DE20B4B Triticum aestivum Traes_5BS_F1DE20B4B N 0.750
Traes_5AS_378F353CF Triticum aestivum Traes_5AS_378F353CF N 0.750
TCM_026909 Theobroma cacao TCM_026909 N 0.714
TCM_022984 Theobroma cacao TCM_022984 N 0.857
Solyc01g006930.2 Solanum lycopersicum Solyc01g006930.2 N 0.745
Si036465m.g Setaria italica Si036465m.g N 0.750
Si022607m.g Setaria italica Si022607m.g N 0.750
PGSC0003DMG400021365 Solanum tuberosum PGSC0003DMG400021365 N 0.745
PGSC0003DMG400011806 Solanum tuberosum PGSC0003DMG400011806 N 0.732
OS12G0618600 Oryza sativa OS12G0618600 N 0.732
ONIVA12G18060 Oryza nivara ONIVA12G18060 N 0.750
ONIVA08G05590 Oryza nivara ONIVA08G05590 N 0.732
ONIVA07G02150 Oryza nivara ONIVA07G02150 N 0.750
ONIVA03G28530 Oryza nivara ONIVA03G28530 N 0.732
OMERI12G13600 Oryza meridionalis OMERI12G13600 N 0.750
OMERI08G05500 Oryza meridionalis OMERI08G05500 N 0.732
OMERI07G18960 Oryza meridionalis OMERI07G18960 N 0.750
OMERI03G24480 Oryza meridionalis OMERI03G24480 N 0.732
OLONG_018144 Oryza longistaminata OLONG_018144 N 0.732
OLONG_002491 Oryza longistaminata OLONG_002491 N 0.732
OGLUM12G20730 Oryza glumaepatula OGLUM12G20730 N 0.750
OGLUM08G05950 Oryza glumaepatula OGLUM08G05950 N 0.732
OPUNC03G25190 Oryza punctata OPUNC03G25190 N 0.732
OPUNC07G03530 Oryza punctata OPUNC07G03530 N 0.750
OS08G0196700 Oryza sativa OS08G0196700 N 0.732
OS07G0158500 Oryza sativa OS07G0158500 N 0.750
OS03G0647600 Oryza sativa OS03G0647600 N 0.732
ORUFI12G21270 Oryza rufipogon ORUFI12G21270 N 0.732
ORUFI08G06250 Oryza rufipogon ORUFI08G06250 N 0.732
ORUFI07G03340 Oryza rufipogon ORUFI07G03340 N 0.732
ORUFI03G28690 Oryza rufipogon ORUFI03G28690 N 0.732
ORGLA12G0163500 Oryza glaberrima ORGLA12G0163500 N 0.750
ORGLA08G0048400 Oryza glaberrima ORGLA08G0048400 N 0.732
ORGLA07G0030900 Oryza glaberrima ORGLA07G0030900 N 0.750
OPUNC12G17240 Oryza punctata OPUNC12G17240 N 0.732
OPUNC08G05330 Oryza punctata OPUNC08G05330 N 0.714
OGLUM07G02990 Oryza glumaepatula OGLUM07G02990 N 0.750