Pavir.Bb00319 (Panicum virgatum)
CBF/NF-Y

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02045 (CBFB_NFYA) IPR001289 Pavir.Bb00319 T160733_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb00319.1.p CBF/NF-Y 129 184
Pavir.Bb00319.2.p CBF/NF-Y 123 178

Links

Other CBF/NF-Y family TFs
Other Panicum virgatum TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29864.m001503 Ricinus communis 29864.m001503 N 0.750
30169.m006445 Ricinus communis 30169.m006445 I 0.732
HAP2A Arabidopsis lyrata Al_scaffold_0006_1178 N 0.732
AMTR_s00155p00071520 Amborella trichopoda AMTR_s00155p00071520 N 0.732
Aquca_026_00359 Aquilegia coerulea Aquca_026_00359 N 0.732
NFYA1 Arabidopsis thaliana AT5G12840 N 0.732
BGIOSGA010142 Oryza indica BGIOSGA010142 N 0.732
BGIOSGA024793 Oryza indica BGIOSGA024793 N 0.786
BGIOSGA028138 Oryza indica BGIOSGA028138 N 0.714
BGIOSGA035818 Oryza indica BGIOSGA035818 N 0.714
Bo2g010950 Brassica oleracea Bo2g010950 N 0.745
Bo3g008860 Brassica oleracea Bo3g008860 N 0.727
Bo9g169310 Brassica oleracea Bo9g169310 N 0.745
Bostr.2902s0020 Boechera stricta Bostr.2902s0020 N 0.732
Bra006165 Brassica rapa Bra006165 N 0.727
Bra008878 Brassica rapa Bra008878 I 0.727
Bra023378 Brassica rapa Bra023378 N 0.709
BRADI1G11800 Brachypodium distachyon BRADI1G11800 I 0.714
BRADI4G01380 Brachypodium distachyon BRADI4G01380 N 0.714
Cagra.1535s0021 Capsella grandiflora Cagra.1535s0021 N 0.732
Carubv10001701m.g Capsella rubella Carubv10001701m.g N 0.732
cassava2144.valid.m1 Manihot esculenta cassava2144.valid.m1 I 0.714
cassava24161.valid.m1 Manihot esculenta cassava24161.valid.m1 N 0.732
cassava29667.valid.m1 Manihot esculenta cassava29667.valid.m1 I 0.750
cassava30668.valid.m1 Manihot esculenta cassava30668.valid.m1 I 0.714
cassava31873.valid.m1 Manihot esculenta cassava31873.valid.m1 N 0.732
cassava31874.valid.m1 Manihot esculenta cassava31874.valid.m1 N 0.732
cassava36568.valid.m1 Manihot esculenta cassava36568.valid.m1 I 0.750
cassava38260.valid.m1 Manihot esculenta cassava38260.valid.m1 I 0.714
Ca_07995 Cicer arietinum Ca_07995 N 0.732
Ca_15574 Cicer arietinum Ca_15574 I 0.714
Ca_20250 Cicer arietinum Ca_20250 N 0.750
Ciclev10005144m.g Citrus clementina Ciclev10005144m.g I 0.714
Ciclev10015808m.g Citrus clementina Ciclev10015808m.g I 0.732
Ciclev10016491m.g Citrus clementina Ciclev10016491m.g N 0.714
Cla000845 Citrullus lanatus Cla000845 N 0.714
Cla008690 Citrullus lanatus Cla008690 N 0.714
Cla009990 Citrullus lanatus Cla009990 N 0.732
Cla015490 Citrullus lanatus Cla015490 I 0.732
Cucsa.048230 Cucumis sativus Cucsa.048230 N 0.732
Cucsa.124180 Cucumis sativus Cucsa.124180 N 0.714
Cucsa.127910 Cucumis sativus Cucsa.127910 I 0.732
estExt_fgenesh1_pg.C_120063 Sporobolomyces roseus estExt_fgenesh1_pg.C_120063 I 0.714
estExt_fgenesh1_pg.C_420118 Physcomitrella patens estExt_fgenesh1_pg.C_420118 N 0.714
estExt_fgenesh2_pg.C_Chr_130205 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_130205 N 0.714
Eucgr.A02381 Eucalyptus grandis Eucgr.A02381 N 0.732
Eucgr.G03377 Eucalyptus grandis Eucgr.G03377 N 0.732
Eucgr.J00764 Eucalyptus grandis Eucgr.J00764 N 0.732
Eucgr.K01943 Eucalyptus grandis Eucgr.K01943 N 0.732
EuGene.0000150165 Micromonas pusilla EuGene.0000150165 N 0.714
evm.TU.supercontig_125.6 Carica papaya evm.TU.supercontig_125.6 I 0.714
evm.TU.supercontig_20.45 Carica papaya evm.TU.supercontig_20.45 N 0.732
evm.TU.supercontig_84.49 Carica papaya evm.TU.supercontig_84.49 I 0.732
F775_09086 Aegilops tauschii F775_09086 N 0.732
gene14681-v1.0-hybrid Fragaria vesca gene14681-v1.0-hybrid I 0.714
gene26819-v1.0-hybrid Fragaria vesca gene26819-v1.0-hybrid N 0.714
gene28941-v1.0-hybrid Fragaria vesca gene28941-v1.0-hybrid N 0.750
GLYMA02G47380 Glycine max GLYMA02G47380 N 0.714
GLYMA08G13090 Glycine max GLYMA08G13090 N 0.714
GLYMA08G45030 Glycine max GLYMA08G45030 I 0.714
GLYMA09G02770 Glycine max GLYMA09G02770 N 0.768
GLYMA12G36540 Glycine max GLYMA12G36540 I 0.732
GLYMA13G27230 Glycine max GLYMA13G27230 I 0.732
GLYMA14G01360 Glycine max GLYMA14G01360 N 0.714
GLYMA15G13660 Glycine max GLYMA15G13660 N 0.768
GLYMA18G07890 Glycine max GLYMA18G07890 I 0.714
Gorai.002G151800 Gossypium raimondii Gorai.002G151800 I 0.714
Gorai.003G093300 Gossypium raimondii Gorai.003G093300 I 0.714
Gorai.004G066000 Gossypium raimondii Gorai.004G066000 I 0.732
Gorai.004G172100 Gossypium raimondii Gorai.004G172100 I 0.732
Gorai.009G115000 Gossypium raimondii Gorai.009G115000 N 0.732
Gorai.011G004400 Gossypium raimondii Gorai.011G004400 N 0.750
Gorai.013G251200 Gossypium raimondii Gorai.013G251200 N 0.750
GRMZM2G096016 Zea mays GRMZM2G096016 N 0.839
GRMZM2G165488 Zea mays GRMZM2G165488 N 0.714
GSMUA_Achr4G03600_001 Musa acuminata GSMUA_Achr4G03600_001 N 0.732
GSMUA_Achr4G11090_001 Musa acuminata GSMUA_Achr4G11090_001 I 0.714
GSMUA_Achr4G31650_001 Musa acuminata GSMUA_Achr4G31650_001 N 0.714
GSMUA_Achr7G01070_001 Musa acuminata GSMUA_Achr7G01070_001 N 0.732
GSMUA_Achr7G07860_001 Musa acuminata GSMUA_Achr7G07860_001 N 0.768
GSMUA_Achr9G10300_001 Musa acuminata GSMUA_Achr9G10300_001 N 0.714
LjSGA_007063.1 Lotus japonicus LjSGA_007063.1 N 0.750
LPERR03G22840 Leersia perrieri LPERR03G22840 N 0.714
LPERR07G03140 Leersia perrieri LPERR07G03140 N 0.839
LPERR08G05240 Leersia perrieri LPERR08G05240 N 0.714
LPERR12G16030 Leersia perrieri LPERR12G16030 N 0.750
Lus10009944.g Linum usitatissimum Lus10009944.g I 0.714
Lus10016411.g Linum usitatissimum Lus10016411.g I 0.714
Lus10019708.g Linum usitatissimum Lus10019708.g I 0.714
Lus10030137.g Linum usitatissimum Lus10030137.g I 0.714
MDP0000183865 Malus domestica MDP0000183865 I 0.955
MDP0000278621 Malus domestica MDP0000278621 N 0.732
MDP0000279028 Malus domestica MDP0000279028 N 0.732
MDP0000682805 Malus domestica MDP0000682805 N 0.732
MLOC_76757 Hordeum vulgare MLOC_76757 N 0.750
MTR_2g030170 Medicago truncatula MTR_2g030170 N 0.732
MTR_3g061510 Medicago truncatula MTR_3g061510 N 0.732
MTR_8g037270 Medicago truncatula MTR_8g037270 N 0.714
OB03G35340 Oryza brachyantha OB03G35340 N 0.732
OB12G25960 Oryza brachyantha OB12G25960 N 0.750
OBART08G05580 Oryza barthii OBART08G05580 N 0.714
OBART12G19060 Oryza barthii OBART12G19060 N 0.714
OGLUM03G28230 Oryza glumaepatula OGLUM03G28230 N 0.732
OGLUM07G02990 Oryza glumaepatula OGLUM07G02990 N 0.786
OGLUM08G05950 Oryza glumaepatula OGLUM08G05950 N 0.714
OGLUM12G20730 Oryza glumaepatula OGLUM12G20730 N 0.714
OLONG_002491 Oryza longistaminata OLONG_002491 N 0.714
OLONG_018144 Oryza longistaminata OLONG_018144 N 0.714
OMERI03G24480 Oryza meridionalis OMERI03G24480 N 0.732
OMERI07G18960 Oryza meridionalis OMERI07G18960 N 0.786
OMERI08G05500 Oryza meridionalis OMERI08G05500 N 0.714
OMERI12G13600 Oryza meridionalis OMERI12G13600 N 0.714
ONIVA03G28530 Oryza nivara ONIVA03G28530 N 0.732
ONIVA07G02150 Oryza nivara ONIVA07G02150 N 0.768
ONIVA08G05590 Oryza nivara ONIVA08G05590 N 0.714
ONIVA12G18060 Oryza nivara ONIVA12G18060 N 0.714
OPUNC03G25190 Oryza punctata OPUNC03G25190 N 0.732
OPUNC07G03530 Oryza punctata OPUNC07G03530 N 0.786
orange1.1g017825m.g Citrus sinensis orange1.1g017825m.g I 0.714
orange1.1g019036m.g Citrus sinensis orange1.1g019036m.g I 0.732
orange1.1g026474m.g Citrus sinensis orange1.1g026474m.g N 0.714
ORGLA07G0030900 Oryza glaberrima ORGLA07G0030900 N 0.786
ORGLA08G0048400 Oryza glaberrima ORGLA08G0048400 N 0.714
ORGLA12G0163500 Oryza glaberrima ORGLA12G0163500 N 0.714
ORUFI03G28690 Oryza rufipogon ORUFI03G28690 N 0.732
ORUFI07G03340 Oryza rufipogon ORUFI07G03340 N 0.768
ORUFI08G06250 Oryza rufipogon ORUFI08G06250 N 0.714
ORUFI12G21270 Oryza rufipogon ORUFI12G21270 N 0.714
OS03G0647600 Oryza sativa OS03G0647600 N 0.732
OS07G0158500 Oryza sativa OS07G0158500 N 0.786
OS08G0196700 Oryza sativa OS08G0196700 N 0.714
OS12G0618600 Oryza sativa OS12G0618600 N 0.714
Pavir.Ba03783 Panicum virgatum Pavir.Ba03783 N 1.000
Pavir.Cb00052 Panicum virgatum Pavir.Cb00052 N 0.768
Pavir.Ia01146 Panicum virgatum Pavir.Ia01146 N 0.732
Pavir.Ib04124 Panicum virgatum Pavir.Ib04124 N 0.732
Pavir.J24924 Panicum virgatum Pavir.J24924 N 0.768
PDK_20s1462571g003 Phoenix dactylifera PDK_20s1462571g003 N 0.714
PGSC0003DMG400006863 Solanum tuberosum PGSC0003DMG400006863 I 0.732
PGSC0003DMG400011806 Solanum tuberosum PGSC0003DMG400011806 N 0.750
PK00926.1 Cannabis sativa PK00926.1 N 0.714
PK11147.1 Cannabis sativa PK11147.1 I 0.714
PK21261.1 Cannabis sativa PK21261.1 I 0.714
Pm010516 Prunus mume Pm010516 N 0.714
Pm012301 Prunus mume Pm012301 I 0.714
Pm016266 Prunus mume Pm016266 N 0.714
POPTR_0001s27300 Populus trichocarpa POPTR_0001s27300 N 0.732
POPTR_0006s05210 Populus trichocarpa POPTR_0006s05210 I 0.714
POPTR_0009s06540 Populus trichocarpa POPTR_0009s06540 N 0.750
POPTR_0016s05440 Populus trichocarpa POPTR_0016s05440 I 0.750
PRUPE_ppa006634mg Prunus persica PRUPE_ppa006634mg I 0.714
PRUPE_ppa011627mg Prunus persica PRUPE_ppa011627mg N 0.714
PRUPE_ppa012173mg Prunus persica PRUPE_ppa012173mg N 0.714
SapurV1A.0027s0420 Salix purpurea SapurV1A.0027s0420 N 0.732
SapurV1A.0083s0230 Salix purpurea SapurV1A.0083s0230 N 0.714
SapurV1A.0111s0280 Salix purpurea SapurV1A.0111s0280 N 0.732
SapurV1A.0133s0410 Salix purpurea SapurV1A.0133s0410 I 0.714
SapurV1A.2739s0010 Salix purpurea SapurV1A.2739s0010 N 0.732
Sb02g003320 Sorghum bicolor Sb02g003320 N 0.804
SELMODRAFT_38090 Selaginella moellendorffii SELMODRAFT_38090 N 0.750
SELMODRAFT_438143 Selaginella moellendorffii SELMODRAFT_438143 N 0.750
Si022607m.g Setaria italica Si022607m.g N 0.750
Si032469m.g Setaria italica Si032469m.g N 0.929
Si036465m.g Setaria italica Si036465m.g N 0.732
Solyc01g087240.2 Solanum lycopersicum Solyc01g087240.2 I 0.714
TCM_005875 Theobroma cacao TCM_005875 I 0.732
TCM_024732 Theobroma cacao TCM_024732 I 0.714
TCM_026909 Theobroma cacao TCM_026909 N 0.732
TCM_040712 Theobroma cacao TCM_040712 I 0.732
Thhalv10014364m.g Eutrema salsugineum Thhalv10014364m.g N 0.727
Traes_4AL_7C4C68FD0 Triticum aestivum Traes_4AL_7C4C68FD0 I 0.714
Traes_4BS_B7B7EFF37 Triticum aestivum Traes_4BS_B7B7EFF37 I 0.714
Traes_4DS_AFBE29C20 Triticum aestivum Traes_4DS_AFBE29C20 I 0.714
Traes_5AS_378F353CF Triticum aestivum Traes_5AS_378F353CF N 0.732
Traes_5BS_F1DE20B4B Triticum aestivum Traes_5BS_F1DE20B4B N 0.732
Traes_5DS_443F1993A Triticum aestivum Traes_5DS_443F1993A N 0.732
TRIUR3_09920 Triticum urartu TRIUR3_09920 I 0.714
TRIUR3_28596 Triticum urartu TRIUR3_28596 N 0.732
VIT_10s0003g04650 Vitis vinifera VIT_10s0003g04650 N 0.714
VIT_13s0064g00860 Vitis vinifera VIT_13s0064g00860 I 0.714