SMU15024997 (Schmidtea mediterranea)
CBF/NF-Y

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02045 (CBFB_NFYA) IPR001289 SMU15024997 T160788_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NFYA
M08104_2.00
Homo sapiens
NSTGATTGGYB

VRCCAATCASN
ChIP-seq
Mathelier et al.(2014)
MA0060.3
0.821 0.821
NFYA
M09018_2.00
Homo sapiens
YKBYSATTGGYYRV

BYRRCCAATSRVMR
Misc
Kulakovskiy et al.(2013)
NFYA_HUMAN.H11MO.0.A
0.821 0.821
Nfya
M09019_2.00
Mus musculus
YKBYSATTGGYYRV

BYRRCCAATSRVMR
Misc
Kulakovskiy et al.(2013)
NFYA_MOUSE.H11MO.0.A
0.821 0.821
NFYA
M10403_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFYA_02
0.821 0.821
NFYA
M10404_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFYA_Q5
0.821 0.821
NFYA
M10405_2.00
Homo sapiens
NYTGATTGGYTAVH

DBTARCCAATCARN
Transfac
Matys et al.(2006)
V$NFY_C
0.821 0.821
HAP2
M08452_2.00
Saccharomyces cerevisiae
TTGGH

DCCAA
COMPILED
Mathelier et al.(2014)
MA0313.1
0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMU15024997 CBF/NF-Y 105 160

Links

Other CBF/NF-Y family TFs
Other Schmidtea mediterranea TFs

464 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA009554 Oryza indica BGIOSGA009554 N 0.000
Bostr.18473s0334 Boechera stricta Bostr.18473s0334 N 0.000
BRADI1G03810 Brachypodium distachyon BRADI1G03810 N 0.000
Gorai.009G090200 Gossypium raimondii Gorai.009G090200 N 0.000
GRMZM2G001205 Zea mays GRMZM2G001205 N 0.000
Lus10021509.g Linum usitatissimum Lus10021509.g N 0.000
MLOC_29808 Hordeum vulgare MLOC_29808 N 0.000
ONIVA03G40690 Oryza nivara ONIVA03G40690 N 0.000
OPUNC03G36130 Oryza punctata OPUNC03G36130 N 0.000
Sb01g003300 Sorghum bicolor Sb01g003300 N 0.000
TRIUR3_26222 Triticum urartu TRIUR3_26222 N 0.000