nLs.2.1.2.g05605 (Litomosoides sigmodontis)
CBF/NF-Y

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02045 (CBFB_NFYA) IPR001289 nLs.2.1.2.g05605 T160894_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NFYA
M08104_2.00
Homo sapiens
NSTGATTGGYB

VRCCAATCASN
ChIP-seq
Mathelier et al.(2014)
MA0060.3
0.857 0.857
NFYA
M09018_2.00
Homo sapiens
YKBYSATTGGYYRV

BYRRCCAATSRVMR
Misc
Kulakovskiy et al.(2013)
NFYA_HUMAN.H11MO.0.A
0.857 0.857
Nfya
M09019_2.00
Mus musculus
YKBYSATTGGYYRV

BYRRCCAATSRVMR
Misc
Kulakovskiy et al.(2013)
NFYA_MOUSE.H11MO.0.A
0.857 0.857
NFYA
M10403_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFYA_02
0.857 0.857
NFYA
M10404_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFYA_Q5
0.857 0.857
NFYA
M10405_2.00
Homo sapiens
NYTGATTGGYTAVH

DBTARCCAATCARN
Transfac
Matys et al.(2006)
V$NFY_C
0.857 0.857
HAP2
M08452_2.00
Saccharomyces cerevisiae
TTGGH

DCCAA
COMPILED
Mathelier et al.(2014)
MA0313.1
0.732 0.732
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t05605-RA CBF/NF-Y 168 223

Links

Other CBF/NF-Y family TFs
Other Litomosoides sigmodontis TFs

269 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action