CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J33757
(
Panicum virgatum
)
CBF/NF-Y,FAR1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02045 (CBFB_NFYA)
PF03101 (FAR1)
IPR001289
IPR004330
Pavir.J33757
T160930_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J33757.1.p
FAR1
12
48
PPAERCGAMMEVVGKDGGGGKWKVSKLVVEHNHELQV
Pavir.J33757.1.p
FAR1
72
157
EFYYGYGERVGFKACTGSNRRSVGNGEKIMQRFQCWRGNYSSRRGKGKDSDEGKEAEEMVEAAAAAAAAARKRKREPYKTRSRNRN
Pavir.J33757.1.p
CBF/NF-Y
269
323
ELGVRASQYNHEERKKIISKYLSKRQSRPASNRPTKIASRQALAERRKRGNGGRF
Pavir.J33757.1.p
FAR1
394
480
EFYVNYAEAEGFSVRKGFLDKTAKNVKKSRAYVCSKEGFRPKNISAESKKPRPETRTGCQAHMTIKITASGKYVVTEFVSDHNHDRE
Pavir.J33757.2.p
FAR1
12
48
PPAERCGAMMEVVGKDGGGGKWKVSKLVVEHNHELQV
Pavir.J33757.2.p
FAR1
72
157
EFYYGYGERVGFKACTGSNRRSVGNGEKIMQRFQCWRGNYSSRRGKGKDSDEGKEAEEMVEAAAAAAAAARKRKREPYKTRSRNRN
Pavir.J33757.2.p
FAR1
368
454
EFYVNYAEAEGFSVRKGFLDKTAKNVKKSRAYVCSKEGFRPKNISAESKKPRPETRTGCQAHMTIKITASGKYVVTEFVSDHNHDRE
Links
Other
CBF/NF-Y,FAR1
family TFs
Other
Panicum virgatum
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J22861
Panicum virgatum
Pavir.J22861
N
0.766
Sb01g006380
Sorghum bicolor
Sb01g006380
N
0.766