Bra016887 (Brassica rapa)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03859 (CG-1) IPR005559 Bra016887 T163035_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CMTA2
M01901_2.00 		Arabidopsis thaliana
NNDVCGYGT
ACRCGBHNN		 PBM
Weirauch et al.(2014)
pTH7506 		0.795 0.795
EICBP.B
M06828_2.00 		Arabidopsis thaliana
DARVCGCGTKDD
HHMACGCGBYTH		 Dap-seq
OMalley et al.(2016)
CAMTA1_col_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016887.1-P CG-1 1 44

Links

Other CG-1 family TFs
Other Brassica rapa TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0248s0103 Capsella grandiflora Cagra.0248s0103 I 0.795
scaffold_803130.1 Arabidopsis lyrata scaffold_803130.1 I 0.795
Bostr.0568s0382 Boechera stricta Bostr.0568s0382 I 0.795
CMTA2 Arabidopsis thaliana AT5G64220 D 0.795
Carubv10025787m.g Capsella rubella Carubv10025787m.g I 0.795
Gorai.005G220600 Gossypium raimondii Gorai.005G220600 I 0.750
Cla013051 Citrullus lanatus Cla013051 I 0.727
mgf015897m Mimulus guttatus mgf015897m I 0.727
Si028797m.g Setaria italica Si028797m.g I 0.727
EICBP.B Arabidopsis thaliana AT5G09410 D 0.727
mgf010601m Mimulus guttatus mgf010601m I 0.727
POPTR_0010s16290 Populus trichocarpa POPTR_0010s16290 I 0.727
mgf024932m Mimulus guttatus mgf024932m I 0.727
Ca_05255 Cicer arietinum Ca_05255 I 0.705
29889.m003372 Ricinus communis 29889.m003372 I 0.705
Aquca_008_00132 Aquilegia coerulea Aquca_008_00132 I 0.705
Lus10003405.g Linum usitatissimum Lus10003405.g I 0.705
Pavir.Ib00572 Panicum virgatum Pavir.Ib00572 I 0.705
Gorai.013G061100 Gossypium raimondii Gorai.013G061100 I 0.705
Gorai.008G089900 Gossypium raimondii Gorai.008G089900 I 0.705
Si034054m.g Setaria italica Si034054m.g I 0.705
Eucgr.H04783 Eucalyptus grandis Eucgr.H04783 I 0.705
Aquca_003_00380 Aquilegia coerulea Aquca_003_00380 I 0.705
Sb02g039710 Sorghum bicolor Sb02g039710 I 0.705
OB10G16130 Oryza brachyantha OB10G16130 I 0.705
OBART03G19880 Oryza barthii OBART03G19880 I 0.705
OBART10G08060 Oryza barthii OBART10G08060 I 0.705
MLOC_63299 Hordeum vulgare MLOC_63299 I 0.705
LPERR10G05550 Leersia perrieri LPERR10G05550 I 0.705
BGIOSGA012779 Oryza indica BGIOSGA012779 I 0.705
GRMZM2G341747 Zea mays GRMZM2G341747 I 0.705
OGLUM03G20490 Oryza glumaepatula OGLUM03G20490 I 0.705
OGLUM10G07770 Oryza glumaepatula OGLUM10G07770 I 0.705
ORGLA10G0066800 Oryza glaberrima ORGLA10G0066800 I 0.705
ORUFI03G20520 Oryza rufipogon ORUFI03G20520 I 0.705
ORUFI10G08490 Oryza rufipogon ORUFI10G08490 I 0.705
ONIVA10G07730 Oryza nivara ONIVA10G07730 I 0.705
ONIVA03G21570 Oryza nivara ONIVA03G21570 I 0.705
OLONG_003971 Oryza longistaminata OLONG_003971 I 0.705
OMERI03G17850 Oryza meridionalis OMERI03G17850 I 0.705
OS10G0375600 Oryza sativa OS10G0375600 I 0.705