CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_2g008840
(
Medicago truncatula
)
CG-1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03859 (CG-1)
IPR005559
MTR_2g008840
T163252_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CMTA2
M01901_2.00
Arabidopsis thaliana
NNDVCGYGT
ACRCGBHNN
PBM
Weirauch et al.(2014)
pTH7506
0.883
0.883
EICBP.B
M06828_2.00
Arabidopsis thaliana
DARVCGCGTKDD
HHMACGCGBYTH
Dap-seq
OMalley et al.(2016)
CAMTA1_col_a
0.842
0.842
CMTA3
M01900_2.00
Arabidopsis thaliana
VCGYGTNNN
NNNACRCGB
PBM
Weirauch et al.(2014)
pTH8209
0.807
0.807
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AES63449
CG-1
21
134
EAQHRWLRPAEICEILRNYRMFHITPEPHTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDALHCYYAHGEENENFQRRSYWLLEQDTHIVFVHYLEV
AES63450
CG-1
21
134
EAQHRWLRPAEICEILRNYRMFHITPEPHTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDALHCYYAHGEENENFQRRSYWLLEQDTHIVFVHYLEV
KEH36443
CG-1
1
94
MFHITPEPHTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDALHCYYAHGEENENFQRRSYWLLEQDTHIVFVHYLEV
Links
Other
CG-1
family TFs
Other
Medicago truncatula
TFs
180 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy