CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_8g090205
(
Medicago truncatula
)
CG-1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03859 (CG-1)
IPR005559
MTR_8g090205
T163259_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CMTA3
M01900_2.00
Arabidopsis thaliana
VCGYGTNNN
NNNACRCGB
PBM
Weirauch et al.(2014)
pTH8209
0.754
0.754
CMTA2
M01901_2.00
Arabidopsis thaliana
NNDVCGYGT
ACRCGBHNN
PBM
Weirauch et al.(2014)
pTH7506
0.754
0.754
EICBP.B
M06828_2.00
Arabidopsis thaliana
DARVCGCGTKDD
HHMACGCGBYTH
Dap-seq
OMalley et al.(2016)
CAMTA1_col_a
0.737
0.737
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KEH20827
CG-1
19
133
QAQYRWLRPAEICQILTNYNSFQISSQPSYMPPSGSLFLFDRKATRYFRKDGHNWRKKKDGKTVREAHERLKAGSVEVLHCYYAHGEQNDNFQRRTYWMLEEELSHIVLVHYREV
KEH20828
CG-1
17
131
QAQYRWLRPAEICQILTNYNSFQISSQPSYMPPSGSLFLFDRKATRYFRKDGHNWRKKKDGKTVREAHERLKAGSVEVLHCYYAHGEQNDNFQRRTYWMLEEELSHIVLVHYREV
KEH20829
CG-1
17
131
QAQYRWLRPAEICQILTNYNSFQISSQPSYMPPSGSLFLFDRKATRYFRKDGHNWRKKKDGKTVREAHERLKAGSVEVLHCYYAHGEQNDNFQRRTYWMLEEELSHIVLVHYREV
KEH20830
CG-1
19
133
QAQYRWLRPAEICQILTNYNSFQISSQPSYMPPSGSLFLFDRKATRYFRKDGHNWRKKKDGKTVREAHERLKAGSVEVLHCYYAHGEQNDNFQRRTYWMLEEELSHIVLVHYREV
KEH20833
CG-1
19
133
QAQYRWLRPAEICQILTNYNSFQISSQPSYMPPSGSLFLFDRKATRYFRKDGHNWRKKKDGKTVREAHERLKAGSVEVLHCYYAHGEQNDNFQRRTYWMLEEELSHIVLVHYREV
Links
Other
CG-1
family TFs
Other
Medicago truncatula
TFs
170 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy