CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OLONG_004418
(
Oryza longistaminata
)
CG-1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03859 (CG-1)
IPR005559
OLONG_004418
T163285_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CMTA2
M01901_2.00
Arabidopsis thaliana
NNDVCGYGT
ACRCGBHNN
PBM
Weirauch et al.(2014)
pTH7506
0.764
0.764
CMTA3
M01900_2.00
Arabidopsis thaliana
VCGYGTNNN
NNNACRCGB
PBM
Weirauch et al.(2014)
pTH8209
0.755
0.755
EICBP.B
M06828_2.00
Arabidopsis thaliana
DARVCGCGTKDD
HHMACGCGBYTH
Dap-seq
OMalley et al.(2016)
CAMTA1_col_a
0.722
0.722
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OLONG_004418-R1
CG-1
22
130
EARKRWLRPTEICEILSNYRSFSLSPEPPNRPGTKSQWTKSFAKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQRRTYWLLEEDFTHIVLVHYLEV
OLONG_004418-R2
CG-1
22
59
EARKRWLRPTEICEILSNYRSFSLSPEPPNRPGKRMGI
OLONG_004418-R2
CG-1
62
109
GRKRMGRPIDVLHCYYAHGEENENFQRRTYWLLEEDFTHIVLVHYLEV
OLONG_004418-R3
CG-1
22
128
EARKRWLRPTEICEILSNYRSFSLSPEPPNRPGTGSWGQLIKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQRRTYWLLEEDFTHIVLVHYLEV
OLONG_004418-R4
CG-1
22
130
EARKRWLRPTEICEILSNYRSFSLSPEPPNRPGTKSQWTKSFAKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQRRTYWLLEEDFTHIVLVHYLEV
Links
Other
CG-1
family TFs
Other
Oryza longistaminata
TFs
155 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy