Carubv10004090m.g (Capsella rubella)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03859 (CG-1) IPR005559 Carubv10004090m.g T163503_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CAMTA5
M06827_2.00
Arabidopsis thaliana
NVGYGTNNDHNVCGYGTN

NACRCGBNDHNNACRCBN
Dap-seq
OMalley et al.(2016)
CAMTA5_col_a
0.974 0.974
Q2WEL1_ORYSA
M10406_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBT_01
0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10004090m CG-1 31 145

Links

Other CG-1 family TFs
Other Capsella rubella TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.000
MDP0000434703 Malus domestica MDP0000434703 I 0.000
AGL62 Arabidopsis thaliana AT5G60440 I 0.000
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.000
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N 0.000
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.000
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.000
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.000
evm.TU.contig_46312 Carica papaya evm.TU.contig_46312 N 0.000
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.000
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.000
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.000
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.000
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.000
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.000
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.000
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.000
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.000
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.000
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.000
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.000
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.000
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.000
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.000
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.000
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.000
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.000
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.000
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.000
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.000
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.000
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.000
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.000
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.000
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.000
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.000
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.000
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.000
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.000
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.000
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.000
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.000
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.000
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.000
MDP0000221590 Malus domestica MDP0000221590 N 0.000
MDP0000233925 Malus domestica MDP0000233925 N 0.000
MDP0000278770 Malus domestica MDP0000278770 N 0.000
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.000
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.000
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.000
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.000
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.000
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.000
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.000
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.000
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.000
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.000
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.000
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.000
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.000
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.000
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.000
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.000
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.000
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.000
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.000
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.000
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.000
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.000
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.000
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.000
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.000
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.000
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.000
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.000
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.000
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.000
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.000
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.000
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.000
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.000
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.000
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.000
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.000
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.000
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.000
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.000
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.000
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.000
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.000
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.000
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.000
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.000
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.000
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.000
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.000
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.000
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.000
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.000
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.000
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.000
AGL28 Arabidopsis thaliana AT1G01530 N 0.000
AGL23 Arabidopsis thaliana AT1G65360 N 0.000
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.000
Bo1g112460 Brassica oleracea Bo1g112460 N 0.000
Bo4g070340 Brassica oleracea Bo4g070340 N 0.000
Bo5g113750 Brassica oleracea Bo5g113750 N 0.000
Bo9g142570 Brassica oleracea Bo9g142570 N 0.000
Bra002480 Brassica rapa Bra002480 N 0.000
Bra011938 Brassica rapa Bra011938 N 0.000
Bra022434 Brassica rapa Bra022434 N 0.000
Bra038225 Brassica rapa Bra038225 N 0.000
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.000
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.000
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.000
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.000
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.000
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.000
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.000
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.000
Ca_04660 Cicer arietinum Ca_04660 N 0.000
Ca_04661 Cicer arietinum Ca_04661 N 0.000
Ca_04662 Cicer arietinum Ca_04662 N 0.000
Ca_04665 Cicer arietinum Ca_04665 N 0.000
Ca_07607 Cicer arietinum Ca_07607 N 0.000
Ca_26354 Cicer arietinum Ca_26354 N 0.000
Cla006571 Citrullus lanatus Cla006571 N 0.000
Pm021017 Prunus mume Pm021017 N 0.000
Pm021018 Prunus mume Pm021018 N 0.000
Pm021070 Prunus mume Pm021070 N 0.000
Pm021071 Prunus mume Pm021071 N 0.000
29613.m000367 Ricinus communis 29613.m000367 N 0.000
30099.m001672 Ricinus communis 30099.m001672 N 0.000
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.000
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.000
mgf022147m Mimulus guttatus mgf022147m N 0.000
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.000
Ca_04659 Cicer arietinum Ca_04659 N 0.000
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.000
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.000
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.000
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.000
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.000
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.000
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.000
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.000
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.000
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.000
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.000
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.000
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.000
TCM_006323 Theobroma cacao TCM_006323 N 0.000
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.000
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.000
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.000
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.000
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.000