Carubv10012963m.g (Capsella rubella)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03859 (CG-1) IPR005559 Carubv10012963m.g T163504_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CAMTA5
M06827_2.00
Arabidopsis thaliana
NVGYGTNNDHNVCGYGTN

NACRCGBNDHNNACRCBN
Dap-seq
OMalley et al.(2016)
CAMTA5_col_a
0.860 0.860
Q2WEL1_ORYSA
M10406_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBT_01
0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012963m CG-1 31 145

Links

Other CG-1 family TFs
Other Capsella rubella TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
27956.m000359 Ricinus communis 27956.m000359 I 0.000
30054.m000809 Ricinus communis 30054.m000809 I 0.000
30125.m001257 Ricinus communis 30125.m001257 I 0.000
AMTR_s00003p00271440 Amborella trichopoda AMTR_s00003p00271440 I 0.000
AMTR_s00032p00221670 Amborella trichopoda AMTR_s00032p00221670 I 0.000
AMTR_s00038p00183620 Amborella trichopoda AMTR_s00038p00183620 I 0.000
AMTR_s00079p00143780 Amborella trichopoda AMTR_s00079p00143780 I 0.000
Aquca_020_00444 Aquilegia coerulea Aquca_020_00444 I 0.000
Aquca_030_00294 Aquilegia coerulea Aquca_030_00294 I 0.000
AtMYB93 Vitis vinifera VIT_18s0001g05670 I 0.000
ATY53 Vitis vinifera VIT_19s0085g00940 I 0.000
ATY53 Arabidopsis thaliana AT3G12720 D 0.000
ATY53 Arabidopsis lyrata scaffold_301452.1 I 0.000
BGIOSGA004306 Oryza indica BGIOSGA004306 I 0.000
BGIOSGA024270 Oryza indica BGIOSGA024270 I 0.000
BGIOSGA027659 Oryza indica BGIOSGA027659 I 0.000
Bo1g134790 Brassica oleracea Bo1g134790 I 0.000
Bo1g138990 Brassica oleracea Bo1g138990 I 0.000
Bo5g133210 Brassica oleracea Bo5g133210 I 0.000
Bostr.28625s0318 Boechera stricta Bostr.28625s0318 I 0.000
Bostr.3640s0047 Boechera stricta Bostr.3640s0047 I 0.000
Bra021515 Brassica rapa Bra021515 I 0.000
Bra027389 Brassica rapa Bra027389 I 0.000
Bra034738 Brassica rapa Bra034738 I 0.000
Bra039339 Brassica rapa Bra039339 I 0.000
BRADI1G26920 Brachypodium distachyon BRADI1G26920 I 0.000
BRADI1G45510 Brachypodium distachyon BRADI1G45510 I 0.000
BRADI1G61397 Brachypodium distachyon BRADI1G61397 I 0.000
BRADI2G47887 Brachypodium distachyon BRADI2G47887 I 0.000
BRADI3G17165 Brachypodium distachyon BRADI3G17165 I 0.000
Cagra.0736s0026 Capsella grandiflora Cagra.0736s0026 I 0.000
Cagra.10702s0006 Capsella grandiflora Cagra.10702s0006 I 0.000
Cagra.5641s0037 Capsella grandiflora Cagra.5641s0037 I 0.000
Carubv10015767m.g Capsella rubella Carubv10015767m.g I 0.000
Carubv10020714m.g Capsella rubella Carubv10020714m.g I 0.000
cassava11527.m1 Manihot esculenta cassava11527.m1 I 0.000
cassava17115.m1 Manihot esculenta cassava17115.m1 I 0.000
cassava176.valid.m1 Manihot esculenta cassava176.valid.m1 I 0.000
cassava26068.m1 Manihot esculenta cassava26068.m1 I 0.000
cassava33147.m1 Manihot esculenta cassava33147.m1 I 0.000
cassava34928.m1 Manihot esculenta cassava34928.m1 I 0.000
cassava44228.m1 Manihot esculenta cassava44228.m1 I 0.000
cassava44907.m1 Manihot esculenta cassava44907.m1 I 0.000
cassava4659.m1 Manihot esculenta cassava4659.m1 I 0.000
Ca_02730 Cicer arietinum Ca_02730 I 0.000
Ca_10069 Cicer arietinum Ca_10069 I 0.000
chr2.CM0124.80.nc Lotus japonicus chr2.CM0124.80.nc I 0.000
chr3.CM0049.330.nc Lotus japonicus chr3.CM0049.330.nc I 0.000
Ciclev10003251m.g Citrus clementina Ciclev10003251m.g I 0.000
Ciclev10006752m.g Citrus clementina Ciclev10006752m.g I 0.000
Ciclev10018009m.g Citrus clementina Ciclev10018009m.g I 0.000
Ciclev10026023m.g Citrus clementina Ciclev10026023m.g I 0.000
Ciclev10027201m.g Citrus clementina Ciclev10027201m.g I 0.000
Cla012793 Citrullus lanatus Cla012793 I 0.000
Cla013211 Citrullus lanatus Cla013211 I 0.000
Cucsa.318610 Cucumis sativus Cucsa.318610 I 0.000
Cucsa.340960 Cucumis sativus Cucsa.340960 I 0.000
estExt_gwp_gw1.C_20043 Physcomitrella patens estExt_gwp_gw1.C_20043 I 0.000
Eucgr.E04323 Eucalyptus grandis Eucgr.E04323 I 0.000
Eucgr.F03143 Eucalyptus grandis Eucgr.F03143 I 0.000
Eucgr.H01337 Eucalyptus grandis Eucgr.H01337 I 0.000
evm.TU.supercontig_18.232 Carica papaya evm.TU.supercontig_18.232 I 0.000
evm.TU.supercontig_25.69 Carica papaya evm.TU.supercontig_25.69 I 0.000
evm.TU.supercontig_752.1 Carica papaya evm.TU.supercontig_752.1 I 0.000
e_gw1.317.17.1 Physcomitrella patens e_gw1.317.17.1 I 0.000
F775_00835 Aegilops tauschii F775_00835 I 0.000
F775_06136 Aegilops tauschii F775_06136 I 0.000
F775_17110 Aegilops tauschii F775_17110 I 0.000
F775_28951 Aegilops tauschii F775_28951 I 0.000
gene06920-v1.0-hybrid Fragaria vesca gene06920-v1.0-hybrid I 0.000
gene16287-v1.0-hybrid Fragaria vesca gene16287-v1.0-hybrid I 0.000
gene19715-v1.0-hybrid Fragaria vesca gene19715-v1.0-hybrid I 0.000
gene19934-v1.0-hybrid Fragaria vesca gene19934-v1.0-hybrid I 0.000
gene31836-v1.0-hybrid Fragaria vesca gene31836-v1.0-hybrid I 0.000
GLYMA01G02070 Glycine max GLYMA01G02070 I 0.000
GLYMA07G01050 Glycine max GLYMA07G01050 I 0.000
GLYMA08G17371 Glycine max GLYMA08G17371 I 0.000
GLYMA08G20440 Glycine max GLYMA08G20440 I 0.000
GLYMA09G33870 Glycine max GLYMA09G33870 I 0.000
GLYMA13G42431 Glycine max GLYMA13G42431 I 0.000
GLYMA15G02955 Glycine max GLYMA15G02955 I 0.000
GLYMA15G41810 Glycine max GLYMA15G41810 I 0.000
Gorai.004G268300 Gossypium raimondii Gorai.004G268300 I 0.000
Gorai.007G236800 Gossypium raimondii Gorai.007G236800 I 0.000
Gorai.009G142200 Gossypium raimondii Gorai.009G142200 I 0.000
Gorai.009G281000 Gossypium raimondii Gorai.009G281000 I 0.000
Gorai.011G063900 Gossypium raimondii Gorai.011G063900 I 0.000
GRMZM2G040924 Zea mays GRMZM2G040924 I 0.000
GRMZM2G088783 Zea mays GRMZM2G088783 I 0.000
GRMZM2G111045 Zea mays GRMZM2G111045 I 0.000
GRMZM2G172327 Zea mays GRMZM2G172327 I 0.000
GRMZM2G325907 Zea mays GRMZM2G325907 I 0.000
GSMUA_Achr10G08070_001 Musa acuminata GSMUA_Achr10G08070_001 I 0.000
GSMUA_Achr10G19130_001 Musa acuminata GSMUA_Achr10G19130_001 I 0.000
GSMUA_Achr10G24560_001 Musa acuminata GSMUA_Achr10G24560_001 I 0.000
GSMUA_Achr2G02970_001 Musa acuminata GSMUA_Achr2G02970_001 I 0.000
GSMUA_Achr3G06470_001 Musa acuminata GSMUA_Achr3G06470_001 I 0.000
GSMUA_Achr5G18080_001 Musa acuminata GSMUA_Achr5G18080_001 I 0.000
GSMUA_Achr6G35800_001 Musa acuminata GSMUA_Achr6G35800_001 I 0.000
GSMUA_Achr7G17250_001 Musa acuminata GSMUA_Achr7G17250_001 I 0.000
GSMUA_Achr8G03510_001 Musa acuminata GSMUA_Achr8G03510_001 I 0.000
GSMUA_Achr8G11340_001 Musa acuminata GSMUA_Achr8G11340_001 I 0.000
GSMUA_Achr9G11190_001 Musa acuminata GSMUA_Achr9G11190_001 I 0.000
GSMUA_Achr9G25110_001 Musa acuminata GSMUA_Achr9G25110_001 I 0.000
GSMUA_AchrUn_randomG15560_001 Musa acuminata GSMUA_AchrUn_randomG15560_001 I 0.000
LjT35F06.10.nd Lotus japonicus LjT35F06.10.nd I 0.000
LPERR01G24370 Leersia perrieri LPERR01G24370 I 0.000
LPERR06G07150 Leersia perrieri LPERR06G07150 I 0.000
LPERR07G12760 Leersia perrieri LPERR07G12760 I 0.000
LPERR08G03020 Leersia perrieri LPERR08G03020 I 0.000
Lus10015608.g Linum usitatissimum Lus10015608.g I 0.000
Lus10038395.g Linum usitatissimum Lus10038395.g I 0.000
MDP0000123873 Malus domestica MDP0000123873 I 0.000
MDP0000126343 Malus domestica MDP0000126343 I 0.000
MDP0000145757 Malus domestica MDP0000145757 I 0.000
MDP0000148894 Malus domestica MDP0000148894 I 0.000
MDP0000157506 Malus domestica MDP0000157506 I 0.000
MDP0000158937 Malus domestica MDP0000158937 I 0.000
MDP0000226667 Malus domestica MDP0000226667 I 0.000
MDP0000228252 Malus domestica MDP0000228252 I 0.000
MDP0000302984 Malus domestica MDP0000302984 I 0.000
MDP0000320772 Malus domestica MDP0000320772 I 0.000
mgf012840m Mimulus guttatus mgf012840m I 0.000
mgf026023m Mimulus guttatus mgf026023m I 0.000
MLOC_16981 Hordeum vulgare MLOC_16981 I 0.000
MLOC_18177 Hordeum vulgare MLOC_18177 I 0.000
MLOC_56753 Hordeum vulgare MLOC_56753 I 0.000
MTR_2g064160 Medicago truncatula MTR_2g064160 I 0.000
MTR_2g099740 Medicago truncatula MTR_2g099740 I 0.000
MTR_8g017340 Medicago truncatula MTR_8g017340 I 0.000
MTR_8g017350 Medicago truncatula MTR_8g017350 I 0.000
MTR_8g017390 Medicago truncatula MTR_8g017390 I 0.000
MTR_8g017440 Medicago truncatula MTR_8g017440 I 0.000
MTR_8g017500 Medicago truncatula MTR_8g017500 I 0.000
MTR_8g017540 Medicago truncatula MTR_8g017540 I 0.000
MYB26 Arabidopsis lyrata fgenesh2_kg.3__1496__AT3G13890.1 I 0.000
MYB26 Populus trichocarpa POPTR_0001s20370 I 0.000
MYB26 Vitis vinifera VIT_09s0002g01670 I 0.000
MYB26 Arabidopsis thaliana AT3G13890 I 0.000
MYB39 Vitis vinifera VIT_02s0012g01650 I 0.000
OB01G37410 Oryza brachyantha OB01G37410 I 0.000
OB06G17320 Oryza brachyantha OB06G17320 I 0.000
OB07G21090 Oryza brachyantha OB07G21090 I 0.000
OB08G13090 Oryza brachyantha OB08G13090 I 0.000
OB08G25790 Oryza brachyantha OB08G25790 I 0.000
OBART06G07710 Oryza barthii OBART06G07710 I 0.000
OBART07G15150 Oryza barthii OBART07G15150 I 0.000
OBART08G03020 Oryza barthii OBART08G03020 I 0.000
OGLUM06G08200 Oryza glumaepatula OGLUM06G08200 I 0.000
OGLUM08G03030 Oryza glumaepatula OGLUM08G03030 I 0.000
OGLUM08G19650 Oryza glumaepatula OGLUM08G19650 I 0.000
OLONG_008660 Oryza longistaminata OLONG_008660 I 0.000
OMERI07G11910 Oryza meridionalis OMERI07G11910 I 0.000
OMERI08G02950 Oryza meridionalis OMERI08G02950 I 0.000
OMERI08G14710 Oryza meridionalis OMERI08G14710 I 0.000
ONIVA06G02400 Oryza nivara ONIVA06G02400 I 0.000
ONIVA06G08940 Oryza nivara ONIVA06G08940 I 0.000
ONIVA08G20680 Oryza nivara ONIVA08G20680 I 0.000
OPUNC01G28160 Oryza punctata OPUNC01G28160 I 0.000
OPUNC07G13970 Oryza punctata OPUNC07G13970 I 0.000
OPUNC08G02760 Oryza punctata OPUNC08G02760 I 0.000
orange1.1g036087m.g Citrus sinensis orange1.1g036087m.g I 0.000
orange1.1g039070m.g Citrus sinensis orange1.1g039070m.g I 0.000
orange1.1g045434m.g Citrus sinensis orange1.1g045434m.g I 0.000
ORGLA01G0234600 Oryza glaberrima ORGLA01G0234600 I 0.000
ORGLA06G0073000 Oryza glaberrima ORGLA06G0073000 I 0.000
ORGLA07G0124200 Oryza glaberrima ORGLA07G0124200 I 0.000
ORGLA08G0023900 Oryza glaberrima ORGLA08G0023900 I 0.000
ORGLA08G0162300 Oryza glaberrima ORGLA08G0162300 I 0.000
ORUFI06G07920 Oryza rufipogon ORUFI06G07920 I 0.000
ORUFI07G15620 Oryza rufipogon ORUFI07G15620 I 0.000
ORUFI08G03380 Oryza rufipogon ORUFI08G03380 I 0.000
ORUFI08G20890 Oryza rufipogon ORUFI08G20890 I 0.000
OS01G0709000 Oryza sativa OS01G0709000 I 0.000
OS06G0221000 Oryza sativa OS06G0221000 I 0.000
OS07G0497500 Oryza sativa OS07G0497500 I 0.000
OS08G0151300 Oryza sativa OS08G0151300 I 0.000
Pavir.Ba00923 Panicum virgatum Pavir.Ba00923 I 0.000
Pavir.Bb02786 Panicum virgatum Pavir.Bb02786 I 0.000
Pavir.Ea02594 Panicum virgatum Pavir.Ea02594 I 0.000
Pavir.Fb00364 Panicum virgatum Pavir.Fb00364 I 0.000
Pavir.Fb01820 Panicum virgatum Pavir.Fb01820 I 0.000
Pavir.J03585 Panicum virgatum Pavir.J03585 I 0.000
Pavir.J21520 Panicum virgatum Pavir.J21520 I 0.000
Pavir.J29561 Panicum virgatum Pavir.J29561 I 0.000
Pavir.J34972 Panicum virgatum Pavir.J34972 I 0.000
PDK_20s1854611g001 Phoenix dactylifera PDK_20s1854611g001 I 0.000
PGSC0003DMG400007325 Solanum tuberosum PGSC0003DMG400007325 I 0.000
PGSC0003DMG400021654 Solanum tuberosum PGSC0003DMG400021654 I 0.000
PGSC0003DMG400037038 Solanum tuberosum PGSC0003DMG400037038 I 0.000
PK22855.1 Cannabis sativa PK22855.1 I 0.000
PK29171.1 Cannabis sativa PK29171.1 I 0.000
Pm002011 Prunus mume Pm002011 I 0.000
Pm004557 Prunus mume Pm004557 I 0.000
Pm010847 Prunus mume Pm010847 I 0.000
Pm010927 Prunus mume Pm010927 I 0.000
Pm013322 Prunus mume Pm013322 I 0.000
POPTR_0001s12240 Populus trichocarpa POPTR_0001s12240 I 0.000
POPTR_0003s15440 Populus trichocarpa POPTR_0003s15440 I 0.000
POPTR_0005s07590 Populus trichocarpa POPTR_0005s07590 I 0.000
POPTR_0005s17080 Populus trichocarpa POPTR_0005s17080 I 0.000
POPTR_0008s08110 Populus trichocarpa POPTR_0008s08110 I 0.000
POPTR_0010s18170 Populus trichocarpa POPTR_0010s18170 I 0.000
PRUPE_ppa015032mg Prunus persica PRUPE_ppa015032mg I 0.000
PRUPE_ppa019923mg Prunus persica PRUPE_ppa019923mg I 0.000
PRUPE_ppa022859mg Prunus persica PRUPE_ppa022859mg I 0.000
PRUPE_ppa026006mg Prunus persica PRUPE_ppa026006mg I 0.000
PRUPE_ppa026618mg Prunus persica PRUPE_ppa026618mg I 0.000
SapurV1A.0093s0250 Salix purpurea SapurV1A.0093s0250 I 0.000
SapurV1A.0122s0490 Salix purpurea SapurV1A.0122s0490 I 0.000
SapurV1A.0149s0490 Salix purpurea SapurV1A.0149s0490 I 0.000
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.000
SapurV1A.0236s0090 Salix purpurea SapurV1A.0236s0090 I 0.000
SapurV1A.0403s0220 Salix purpurea SapurV1A.0403s0220 I 0.000
SapurV1A.0538s0150 Salix purpurea SapurV1A.0538s0150 I 0.000
SapurV1A.0966s0040 Salix purpurea SapurV1A.0966s0040 I 0.000
SapurV1A.1009s0010 Salix purpurea SapurV1A.1009s0010 I 0.000
SapurV1A.1869s0040 Salix purpurea SapurV1A.1869s0040 I 0.000
SapurV1A.2488s0010 Salix purpurea SapurV1A.2488s0010 I 0.000
SapurV1A.4138s0010 Salix purpurea SapurV1A.4138s0010 I 0.000
Sb02g033830 Sorghum bicolor Sb02g033830 I 0.000
Sb03g032600 Sorghum bicolor Sb03g032600 I 0.000
Sb04g033670 Sorghum bicolor Sb04g033670 I 0.000
Sb07g003320 Sorghum bicolor Sb07g003320 I 0.000
Si002319m.g Setaria italica Si002319m.g I 0.000
Si008086m.g Setaria italica Si008086m.g I 0.000
Si017785m.g Setaria italica Si017785m.g I 0.000
Si030152m.g Setaria italica Si030152m.g I 0.000
Solyc02g082040.2 Solanum lycopersicum Solyc02g082040.2 I 0.000
Solyc03g121740.1 Solanum lycopersicum Solyc03g121740.1 I 0.000
Solyc05g048830.2 Solanum lycopersicum Solyc05g048830.2 I 0.000
Solyc10g005240.2 Solanum lycopersicum Solyc10g005240.2 I 0.000
TCM_001102 Theobroma cacao TCM_001102 I 0.000
TCM_005977 Theobroma cacao TCM_005977 I 0.000
TCM_029065 Theobroma cacao TCM_029065 I 0.000
TCM_033645 Theobroma cacao TCM_033645 I 0.000
TCM_034902 Theobroma cacao TCM_034902 I 0.000
Thhalv10021042m.g Eutrema salsugineum Thhalv10021042m.g I 0.000
Thhalv10022066m.g Eutrema salsugineum Thhalv10022066m.g I 0.000
Traes_2AS_40FA27AE7 Triticum aestivum Traes_2AS_40FA27AE7 I 0.000
Traes_2BS_CA02DC5B2 Triticum aestivum Traes_2BS_CA02DC5B2 I 0.000
Traes_3AL_E3BF20F0D Triticum aestivum Traes_3AL_E3BF20F0D I 0.000
Traes_7AL_04D939077 Triticum aestivum Traes_7AL_04D939077 I 0.000
Traes_7BS_7E91DE546 Triticum aestivum Traes_7BS_7E91DE546 I 0.000
Traes_7DL_5BD0D4BD1 Triticum aestivum Traes_7DL_5BD0D4BD1 I 0.000
Traes_7DS_469ED3135 Triticum aestivum Traes_7DS_469ED3135 I 0.000
TRIUR3_24104 Triticum urartu TRIUR3_24104 I 0.000
TRIUR3_25230 Triticum urartu TRIUR3_25230 I 0.000
TRIUR3_26358 Triticum urartu TRIUR3_26358 I 0.000
VIT_01s0010g00410 Vitis vinifera VIT_01s0010g00410 I 0.000
VIT_05s0020g01100 Vitis vinifera VIT_05s0020g01100 I 0.000
VIT_07s0141g00100 Vitis vinifera VIT_07s0141g00100 I 0.000